Non-Coding RNA Search

Ss1.1-risp34_j17.5

Sequence:


               
               ATTAACCCACTGAGCAAGGGCAGGGATGGAACCCGCAACCTCATGGTTCCTAGTCGGATT
CATTAACCACTGCGCCACGATGGGAACTCCAGCACTACTTTAGAAGTAGATTTAACTAGC
TTAGTTTCCTGGTTTCCAAACCTAAAGCAGATTAAATTCTACAGATTTAAGGACAGTTGT
GATAGCAATCTGACAACTATAAATGCATTGTTTCCAAGTTTCCCCTCCTTCTTCACTGCT
AAATTTATAACCATCTCTAACCTGGGCAGTTAAAAAGAATGACTTTTCTTGAGGGAGAAC
TATTAATCATCAAAGATTCACACAGTTCTGTTGTTGAAATTTAACTTCTGAATTAGGTCT
CCCTGGTAGCCTAGTGGTTAAGGATCCAGCATTGTCACTGATGTGGCTTCGGTTTGACCC
CTCACCTGGGAACTTCCCTATGCTGTGGGTGTGGCCAAAAAAAGTAATAAAATAAAGATG
GTAAGAAAAGTATCTGAAAACCAATATATTTAACGAAAGCAAAAGGTAATGACTGACCGA
CAGTTGTAAAAAATGAATGAATTCTAATAAATAAATAATAAGTTGACAGTTTTGAACCAT
AGCTGTATTGGATTATCTGTAATAGGGCAAATATCCACCTCAGTGATTTTTGGATATCAT
CTTGCCACTAGAAAATTAAATGGTTCATATTCCTTATTAGGCATATTAATGACAATTATT
ATAACCTGCATGGCCTATTTTAAAGTTTGAGAGGCATGTTACACATTATTTCATCAAATG
TAGCTAAAATAACAGCTTTAGACTTTATTTGACTAAAAAGTATTTAAGTAGAATGCTTCG
TTCCTGAGTGATGTTAGATGAGGTACCGTAATATTGCATTTTGAGAATGGTTCTGTGCCT
TGGTTCTTCATTAATTCAAGTCAGTCTTGCTCTTTAACTTGAGAAGTTTGCCAGTTTAAC
CAGTATGCTGTGATAATTTTATGAGTTTCAAGGGTAACTGAGGAAGTATGAGACCTGTCA
TCCTATCTCTGAACACTGTAACCCACGTGAATTGTAATCCATTTCTGCTATGTCTTCAGC
TGCTCTGTCTAGTGGGCAAATGTCACTTTTATGTCATGTGCCAAGAAAATAAAAATCTTT
TCTAAGGGAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTAACCCACTGAGCAAGGGCAGGGATGGAACCCGCAACCTCATGGTTCCTAGTCGGATT
CATTAACCACTGCGCCACGATGGGAACTCCAGCACTACTTTAGAAGTAGATTTAACTAGC
TTAGTTTCCTGGTTTCCAAACCTAAAGCAGATTAAATTCTACAGATTTAAGGACAGTTGT
GATAGCAATCTGACAACTATAAATGCATTGTTTCCAAGTTTCCCCTCCTTCTTCACTGCT
AAATTTATAACCATCTCTAACCTGGGCAGTTAAAAAGAATGACTTTTCTTGAGGGAGAAC
TATTAATCATCAAAGATTCACACAGTTCTGTTGTTGAAATTTAACTTCTGAATTAGGTCT
CCCTGGTAGCCTAGTGGTTAAGGATCCAGCATTGTCACTGATGTGGCTTCGGTTTGACCC
CTCACCTGGGAACTTCCCTATGCTGTGGGTGTGGCCAAAAAAAGTAATAAAATAAAGATG
GTAAGAAAAGTATCTGAAAACCAATATATTTAACGAAAGCAAAAGGTAATGACTGACCGA
CAGTTGTAAAAAATGAATGAATTCTAATAAATAAATAATAAGTTGACAGTTTTGAACCAT
AGCTGTATTGGATTATCTGTAATAGGGCAAATATCCACCTCAGTGATTTTTGGATATCAT
CTTGCCACTAGAAAATTAAATGGTTCATATTCCTTATTAGGCATATTAATGACAATTATT
ATAACCTGCATGGCCTATTTTAAAGTTTGAGAGGCATGTTACACATTATTTCATCAAATG
TAGCTAAAATAACAGCTTTAGACTTTATTTGACTAAAAAGTATTTAAGTAGAATGCTTCG
TTCCTGAGTGATGTTAGATGAGGTACCGTAATATTGCATTTTGAGAATGGTTCTGTGCCT
TGGTTCTTCATTAATTCAAGTCAGTCTTGCTCTTTAACTTGAGAAGTTTGCCAGTTTAAC
CAGTATGCTGTGATAATTTTATGAGTTTCAAGGGTAACTGAGGAAGTATGAGACCTGTCA
TCCTATCTCTGAACACTGTAACCCACGTGAATTGTAATCCATTTCTGCTATGTCTTCAGC
TGCTCTGTCTAGTGGGCAAATGTCACTTTTATGTCATGTGCCAAGAAAATAAAAATCTTT
TCTAAGGGAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               546-1149, gnl|bosTau2|chr3 (35353966-35353351)
               

               
               546-1149, gnl|Hg17|chr1 (100101018-100101596)
               

               
               546-1149, gnl|Mm7|chr3 (116516935-116516403)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               546-1149, gnl|bosTau2|chr3 (35353966-35353351)
               

               
               546-1149, gnl|Hg17|chr1 (100101018-100101596)
               

               
               546-1149, gnl|Mm7|chr3 (116516935-116516403)

Expressed library(ies): 19 entry(ies)

More info

Expressed library(ies): 19 entry(ies)

Help | Less info


               
               sme (2.44349)
               

               
               bfe (1.79829)
               

               
               ste (1.75771)
               

               
               ldo (0.970026)
               

               
               isp (0.902256)
               

               
               tbr (0.770891)
               

               
               vin (0.665115)
               

               
               ret (0.643666)
               

               
               nms (0.427716)
               

               
               ssp (0.406559)
               

               
               mgm (0.360685)
               

               
               lyg (0.266205)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               aor (0.195274)
               

               
               ski (0.146735)
               

               
               hlv (0.139256)
               

               
               thg (0.126791)
               

               
               cty (0.10408)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (2.44349)
               

               
               bfe (1.79829)
               

               
               ste (1.75771)
               

               
               ldo (0.970026)
               

               
               isp (0.902256)
               

               
               tbr (0.770891)
               

               
               vin (0.665115)
               

               
               ret (0.643666)
               

               
               nms (0.427716)
               

               
               ssp (0.406559)
               

               
               mgm (0.360685)
               

               
               lyg (0.266205)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               aor (0.195274)
               

               
               ski (0.146735)
               

               
               hlv (0.139256)
               

               
               thg (0.126791)
               

               
               cty (0.10408)

	546-1149, gnl\|bosTau2\|chr3 (35353966-35353351)
	546-1149, gnl\|Hg17\|chr1 (100101018-100101596)
	546-1149, gnl\|Mm7\|chr3 (116516935-116516403)

	sme (2.44349)
	bfe (1.79829)
	ste (1.75771)
	ldo (0.970026)
	isp (0.902256)
	tbr (0.770891)
	vin (0.665115)
	ret (0.643666)
	nms (0.427716)
	ssp (0.406559)
	mgm (0.360685)
	lyg (0.266205)
	mas (0.210305)
	tes (0.207814)
	aor (0.195274)
	ski (0.146735)
	hlv (0.139256)
	thg (0.126791)
	cty (0.10408)