Non-Coding RNA Search

Ss1.1-risp36_f15.5

Sequence:


               
               AACATTTTGTTATTCAATATTGGGAATTTCCCATGGTGCTGAGAGAGGTGCTAAGATACT
TGAACCTTAGTGCTTAGTGCTATTGAATTAATTTGTTTTAGTTTTCTAAGCACATTTCTG
AGTTTTACACTTAACTGCCTTCATCTTGACCAGACAAGTCATTTGCACAACTAGTATCGT
TAATCATGGTCTCCCAGTGCAGCTTGTGTTTGGTGTGCATGTGCACACATGTTTATTTAA
GAGTTAATAACTGAGAGTTTGTAATTGTGGAATGTTGGTATTCGTGAACAAATGGCAAAA
GGACCCTGTGTACATTTATATCTTTGGCCACCGTTTTCCAAAAGCTATCTGGAACAGATT
TTTATTATTTTTCCCTAGCAACATTAAGTGCTACATGTCATATAAGCAACTGATTTAGAA
AGTCTACTCAATTCCTTATTCCTGGAATTAGTACACTAGCTGTATCTTCACAAATTTATT
GATATATGAAAAGGGGGTACCTGAAATTTGGCAATTGGAAATCAAAGTATAAAACTGTCT
TTTTGGTGATAAAGAGCAGCTGTTTCTTTAATTACTGTTTGTGTCCAGTTTACAATTGCC
AGTGTGTCCACCTGTAAAACAGTGTACCTGCACAATGAAACTGACTGCCACCAAATCTCT
ATTGCTGTACCCTTCCATCTTTACTTGTGTATTCACTAACAAAAAGAAAGAAAAAAAGAT
GTGACCTTGTTGGTCTGTGCTCTAGTAGCAATTGCACTGTGTGAACACTGTCTGCCCATT
GGGGGAAGTTTCTATCTGCTGCTGCCACAGTATATTTATGCTGCTTGTTAAGTACAGGGA
ATTACTTTGACACTGGCACTCATTGTAATGTACAGACTGTTGTTAAATGGATGTATATGT
AACAGATTTTTGTATTTTATATGCAAAGTCCTCATAGAATCCTCTGCAATATGTAATAAG
CTAGCTAAGCATGTGATAGTCTTGAAAGGAAAATCTTTCCCATGCCCAGAAGATATTAAG
TGGTAAATAAAAGCTGCATGATCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACATTTTGTTATTCAATATTGGGAATTTCCCATGGTGCTGAGAGAGGTGCTAAGATACT
TGAACCTTAGTGCTTAGTGCTATTGAATTAATTTGTTTTAGTTTTCTAAGCACATTTCTG
AGTTTTACACTTAACTGCCTTCATCTTGACCAGACAAGTCATTTGCACAACTAGTATCGT
TAATCATGGTCTCCCAGTGCAGCTTGTGTTTGGTGTGCATGTGCACACATGTTTATTTAA
GAGTTAATAACTGAGAGTTTGTAATTGTGGAATGTTGGTATTCGTGAACAAATGGCAAAA
GGACCCTGTGTACATTTATATCTTTGGCCACCGTTTTCCAAAAGCTATCTGGAACAGATT
TTTATTATTTTTCCCTAGCAACATTAAGTGCTACATGTCATATAAGCAACTGATTTAGAA
AGTCTACTCAATTCCTTATTCCTGGAATTAGTACACTAGCTGTATCTTCACAAATTTATT
GATATATGAAAAGGGGGTACCTGAAATTTGGCAATTGGAAATCAAAGTATAAAACTGTCT
TTTTGGTGATAAAGAGCAGCTGTTTCTTTAATTACTGTTTGTGTCCAGTTTACAATTGCC
AGTGTGTCCACCTGTAAAACAGTGTACCTGCACAATGAAACTGACTGCCACCAAATCTCT
ATTGCTGTACCCTTCCATCTTTACTTGTGTATTCACTAACAAAAAGAAAGAAAAAAAGAT
GTGACCTTGTTGGTCTGTGCTCTAGTAGCAATTGCACTGTGTGAACACTGTCTGCCCATT
GGGGGAAGTTTCTATCTGCTGCTGCCACAGTATATTTATGCTGCTTGTTAAGTACAGGGA
ATTACTTTGACACTGGCACTCATTGTAATGTACAGACTGTTGTTAAATGGATGTATATGT
AACAGATTTTTGTATTTTATATGCAAAGTCCTCATAGAATCCTCTGCAATATGTAATAAG
CTAGCTAAGCATGTGATAGTCTTGAAAGGAAAATCTTTCCCATGCCCAGAAGATATTAAG
TGGTAAATAAAAGCTGCATGATCA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1-108, + strand, RNAz p=0.97429

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-108, + strand, RNAz p=0.97429

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1044, gnl|bosTau2|chr8 (55440096-55439061)
               

               
               1-1044, gnl|Hg17|chr9 (111201891-111200846)
               

               
               1-1044, gnl|Mm7|chr4 (58839657-58838633)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1044, gnl|bosTau2|chr8 (55440096-55439061)
               

               
               1-1044, gnl|Hg17|chr9 (111201891-111200846)
               

               
               1-1044, gnl|Mm7|chr4 (58839657-58838633)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               aor (0.390549)
               

               
               fbs (0.175346)
               

               
               isp (0.150376)
               

               
               lin (0.145603)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.390549)
               

               
               fbs (0.175346)
               

               
               isp (0.150376)
               

               
               lin (0.145603)

	1-1044, gnl\|bosTau2\|chr8 (55440096-55439061)
	1-1044, gnl\|Hg17\|chr9 (111201891-111200846)
	1-1044, gnl\|Mm7\|chr4 (58839657-58838633)