Non-Coding RNA Search

Ss1.1-risp36_m6.5

Sequence:


               
               TTTTTTTTTTTTCAGGCATAGAAGTTTATTTTAGATCATAGTACATTGTGAGTATCTGCC
CAACATTCCCTCCAAATTGCCATTCCTTCTCATCATCCCTTGGCACTTGAGTCAGAAGCC
CCTTCTCTGCATCACCACTCCTTCCTTAATGAAAACTTTACAGCATAAAAGCAGTTACAG
TGAGTGGCAATCTCACAGTCCTTTCTTTGAATTCCATCTCATCAACCTACAATCCAAGTT
GGGTTATTCTTTTCCCAAGTCACCAGCAGAACCAGCTGTGTTCTAGGCAACACATGGTGG
AATCCAATTTAAAGTGCTCAAAGACCCGGTTTCCATTACATCAATTAAAAGACTCTTTGG
CAGAAATGTGTTAATCATCGTACTGCTTACTTTTTACTTCAAGCATGCAGGCAAAATGCT
TTGGCCAGTTGTAAGGTATCTAATATTCCTCTTCCTAGGCTCTGAGACCTAATGTGAAGG
TATATGCTGCTGAACCCTTGAATGCAGATGACTGCTACCAGTCCAAACTGAGAGGAGAAC
TGACCCCCAATCCTCAACCTCCAGACACAATAGCAGATGGGGTCAAATCCAGCATTGGCC
TAAACACCTGGCCTATCATAAGGGACCTTGTGGATGATGTCTTCACTGTCACAGAGGATG
AAATTAAGGTGAGGCTCCAAGAGGTAAAGAAATAACAAAAGAATGGAGCAACTTATGCAA
AAACCCTTCCCTTTGTAAGTAGCAACTCACCCACTGGGGACTTGACTAGGTGGTTTCATG
AATGTGGGAGGGTGCCCTAGATGTATCAAGATAACAGAAGTGTAGTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTCAGGCATAGAAGTTTATTTTAGATCATAGTACATTGTGAGTATCTGCC
CAACATTCCCTCCAAATTGCCATTCCTTCTCATCATCCCTTGGCACTTGAGTCAGAAGCC
CCTTCTCTGCATCACCACTCCTTCCTTAATGAAAACTTTACAGCATAAAAGCAGTTACAG
TGAGTGGCAATCTCACAGTCCTTTCTTTGAATTCCATCTCATCAACCTACAATCCAAGTT
GGGTTATTCTTTTCCCAAGTCACCAGCAGAACCAGCTGTGTTCTAGGCAACACATGGTGG
AATCCAATTTAAAGTGCTCAAAGACCCGGTTTCCATTACATCAATTAAAAGACTCTTTGG
CAGAAATGTGTTAATCATCGTACTGCTTACTTTTTACTTCAAGCATGCAGGCAAAATGCT
TTGGCCAGTTGTAAGGTATCTAATATTCCTCTTCCTAGGCTCTGAGACCTAATGTGAAGG
TATATGCTGCTGAACCCTTGAATGCAGATGACTGCTACCAGTCCAAACTGAGAGGAGAAC
TGACCCCCAATCCTCAACCTCCAGACACAATAGCAGATGGGGTCAAATCCAGCATTGGCC
TAAACACCTGGCCTATCATAAGGGACCTTGTGGATGATGTCTTCACTGTCACAGAGGATG
AAATTAAGGTGAGGCTCCAAGAGGTAAAGAAATAACAAAAGAATGGAGCAACTTATGCAA
AAACCCTTCCCTTTGTAAGTAGCAACTCACCCACTGGGGACTTGACTAGGTGGTTTCATG
AATGTGGGAGGGTGCCCTAGATGTATCAAGATAACAGAAGTGTAGTTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57090529|ref|XP_547787.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57090529|ref|XP_547787.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               200-311, - strand, RNAz p=0.682449

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               200-311, - strand, RNAz p=0.682449

Aligned organism(s): 1 entry(ies)

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Aligned organism(s): 1 entry(ies)

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               3-488, gnl|bosTau2|chr10 (35708907-35709394)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-488, gnl|bosTau2|chr10 (35708907-35709394)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               cte (0.29274)
               

               
               lin (0.291206)
               

               
               csk (0.281492)
               

               
               ova (0.258264)
               

               
               thg (0.253582)
               

               
               mgp (0.230681)
               

               
               cmu (0.186393)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               spl (0.143184)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               cly (0.120642)
               

               
               nbm (0.0993246)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)
               

               
               lin (0.291206)
               

               
               csk (0.281492)
               

               
               ova (0.258264)
               

               
               thg (0.253582)
               

               
               mgp (0.230681)
               

               
               cmu (0.186393)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               spl (0.143184)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               cly (0.120642)
               

               
               nbm (0.0993246)

	cte (0.29274)
	lin (0.291206)
	csk (0.281492)
	ova (0.258264)
	thg (0.253582)
	mgp (0.230681)
	cmu (0.186393)
	lun (0.150489)
	isp (0.150376)
	bfe (0.149858)
	spl (0.143184)
	lyg (0.133103)
	kid (0.129735)
	cly (0.120642)
	nbm (0.0993246)