Ss1.1-risp38_c14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTACTTCTGTTTTTTCTGAATAGGAGATCCCGTGTGTTGACTACATTCTTGAGACTTGCG TGATGTGATGCTTGAGAGAGGACAGAAAAGATCCGGTTGCATAAAGTTTATTTGTGCTAT TTCTTTCTGAGAGCAAGCAGCTTTTCCCATCTCTCACACTGTTTCCTGTTCAGGTGACCA GAGAAGCTAAGGTGTTCTGTGGGTTTGGGAATGGTGATTCCTGGGAAAGTAGATTTGGAT TTATTCTTCAACTTCTGTCCTTTGGGCTATAGAGAACCTGCATTTCCATGTTGGCTGGGC AGTGTGCTGAGAAGGGCTTGCGTGCTCTGTTGCATAGGTCCCCTTCTGTCCTGCCTAAGG ACATATCTGAGAAGATGAGCGCGATGGAGCCTTTGTACAGCAGGAATCGGGTATGTGAGG TGTTAGGCAGTCATGGGGAACCCTTGAAGGTATGAACAGACTGTTAGTAAAAACTGATTT GAGCCTAATTTTGATAGTATCGTGCACAGTCTATCTGCCTTTGTGTGTGCAGTTATGGAG GCTCCTTGTACGTGTACACACCGGTGTTGGCTCTGGTATTTAGTACTTAACTAAAGAAGG AACTGTTACATGACCTGACAAAGTGCAAGTCATAAGGAATTGGAGGCCATTTTTAGAATG TTATTTTTAATTACTTGTATCTACTTCTAGCAGCCAAAGCCAAGATAACCATAGCATAAA TCCCTTTGTGTGCATATGCTCGTGGTTTTTTGTTAT------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------TCCTGCAACCTCATGGTTACTAGT TGGATTCCTTCCTGCTGGGCCATAATGGAACTCCATATGCTTGTGTTTTAATAGCAGTTT GTTCTGATGAACTATCAGTCACTTCAAGTTTTATCCTGAAGTTTTTAATCAGGCTCAAAA TGTTGGCATACTACTCTACTTGGTATCAAGCAAGCAGTTAAACACAATGCAAACAAAGAA GTATCTTGACTTGCCGTTACTTGAATTGGAGAGAATATTATNGTTACTACACTTCTGCTT TAACGGGGAGTTTTTTCCCCCCACTTCAGAAGAGTTAGCAGTTGAGTATTTAGCTCCTGA CATACCTATAATTTATAGGCAGCATTATTGCTGTTTCAATGATTGTTTGCCTAACAAAGG GTTTTTTTTTTCTTTTTGGTAGACTATACAGTGGACAACTTAGTGACTAGGTATGTGGAT GATTTGGTGGGAGTAGGTGTACAACACTTAGCAGAGTGGTCTGGTATATTTTATGGAAGA GAATTCACTGGAGGGGAAATCATAGTATATTGTGAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTACTTCTGTTTTTTCTGAATAGGAGATCCCGTGTGTTGACTACATTCTTGAGACTTGCG TGATGTGATGCTTGAGAGAGGACAGAAAAGATCCGGTTGCATAAAGTTTATTTGTGCTAT TTCTTTCTGAGAGCAAGCAGCTTTTCCCATCTCTCACACTGTTTCCTGTTCAGGTGACCA GAGAAGCTAAGGTGTTCTGTGGGTTTGGGAATGGTGATTCCTGGGAAAGTAGATTTGGAT TTATTCTTCAACTTCTGTCCTTTGGGCTATAGAGAACCTGCATTTCCATGTTGGCTGGGC AGTGTGCTGAGAAGGGCTTGCGTGCTCTGTTGCATAGGTCCCCTTCTGTCCTGCCTAAGG ACATATCTGAGAAGATGAGCGCGATGGAGCCTTTGTACAGCAGGAATCGGGTATGTGAGG TGTTAGGCAGTCATGGGGAACCCTTGAAGGTATGAACAGACTGTTAGTAAAAACTGATTT GAGCCTAATTTTGATAGTATCGTGCACAGTCTATCTGCCTTTGTGTGTGCAGTTATGGAG GCTCCTTGTACGTGTACACACCGGTGTTGGCTCTGGTATTTAGTACTTAACTAAAGAAGG AACTGTTACATGACCTGACAAAGTGCAAGTCATAAGGAATTGGAGGCCATTTTTAGAATG TTATTTTTAATTACTTGTATCTACTTCTAGCAGCCAAAGCCAAGATAACCATAGCATAAA TCCCTTTGTGTGCATATGCTCGTGGTTTTTTGTTAT------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------TCCTGCAACCTCATGGTTACTAGT TGGATTCCTTCCTGCTGGGCCATAATGGAACTCCATATGCTTGTGTTTTAATAGCAGTTT GTTCTGATGAACTATCAGTCACTTCAAGTTTTATCCTGAAGTTTTTAATCAGGCTCAAAA TGTTGGCATACTACTCTACTTGGTATCAAGCAAGCAGTTAAACACAATGCAAACAAAGAA GTATCTTGACTTGCCGTTACTTGAATTGGAGAGAATATTATNGTTACTACACTTCTGCTT TAACGGGGAGTTTTTTCCCCCCACTTCAGAAGAGTTAGCAGTTGAGTATTTAGCTCCTGA CATACCTATAATTTATAGGCAGCATTATTGCTGTTTCAATGATTGTTTGCCTAACAAAGG GTTTTTTTTTTCTTTTTGGTAGACTATACAGTGGACAACTTAGTGACTAGGTATGTGGAT GATTTGGTGGGAGTAGGTGTACAACACTTAGCAGAGTGGTCTGGTATATTTTATGGAAGA GAATTCACTGGAGGGGAAATCATAGTATATTGTGAA |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 2-585, gnl|bosTau2|chr10 (17239515-17238936) | |
| 2-585, gnl|canFam2|chr30 (12383301-12383872) | |
| 2-585, gnl|dasNov1|scaffold_52236 (345-887) | |
| 2-585, gnl|echTel1|scaffold_309926 (85571-85063) | |
| 2-585, gnl|hg17|chr15 (40493783-40494351) | |
| 2-585, gnl|Hg17|chr15 (40494550-40493967) | |
| 2-585, gnl|mm7|chr2 (120248981-120249393) | |
| 2-585, gnl|monDom2|scaffold_53 (12125908-12125274) | |
| 2-585, gnl|oryCun1|scaffold_188640 (25421-25886) | |
| 2-585, gnl|panTro1|chr16 (40474393-40474963) | |
| 2-585, gnl|rheMac2|chr7 (20843938-20844513) | |
| 2-585, gnl|rn3|chr3 (106897521-106897956) | |
| 815-1296, gnl|bosTau2|chr10 (17238419-17237947) | |
| 815-1296, gnl|canFam2|chr30 (12382361-12382825) | |
| 815-1296, gnl|dasNov1|scaffold_121276 (9598-10028) | |
| 815-1296, gnl|echTel1|scaffold_309926 (86461-86038) | |
| 815-1296, gnl|hg17|chr15 (40492832-40493285) | |
| 815-1296, gnl|Hg17|chr15 (40493488-40492994) | |
| 815-1296, gnl|mm7|chr2 (120248101-120248556) | |
| 815-1296, gnl|Mm7|chr2 (120248716-120248245) | |
| 815-1296, gnl|monDom2|scaffold_53 (12126871-12126418) | |
| 815-1296, gnl|oryCun1|scaffold_148722 (17435-17865) | |
| 815-1296, gnl|panTro1|chr16 (40473441-40473895) | |
| 815-1296, gnl|rheMac2|chr7 (20842990-20843442) | |
| 815-1296, gnl|rn3|chr3 (106896475-106896915) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-585, gnl|bosTau2|chr10 (17239515-17238936) | |
| 2-585, gnl|canFam2|chr30 (12383301-12383872) | |
| 2-585, gnl|dasNov1|scaffold_52236 (345-887) | |
| 2-585, gnl|echTel1|scaffold_309926 (85571-85063) | |
| 2-585, gnl|hg17|chr15 (40493783-40494351) | |
| 2-585, gnl|Hg17|chr15 (40494550-40493967) | |
| 2-585, gnl|mm7|chr2 (120248981-120249393) | |
| 2-585, gnl|monDom2|scaffold_53 (12125908-12125274) | |
| 2-585, gnl|oryCun1|scaffold_188640 (25421-25886) | |
| 2-585, gnl|panTro1|chr16 (40474393-40474963) | |
| 2-585, gnl|rheMac2|chr7 (20843938-20844513) | |
| 2-585, gnl|rn3|chr3 (106897521-106897956) | |
| 815-1296, gnl|bosTau2|chr10 (17238419-17237947) | |
| 815-1296, gnl|canFam2|chr30 (12382361-12382825) | |
| 815-1296, gnl|dasNov1|scaffold_121276 (9598-10028) | |
| 815-1296, gnl|echTel1|scaffold_309926 (86461-86038) | |
| 815-1296, gnl|hg17|chr15 (40492832-40493285) | |
| 815-1296, gnl|Hg17|chr15 (40493488-40492994) | |
| 815-1296, gnl|mm7|chr2 (120248101-120248556) | |
| 815-1296, gnl|Mm7|chr2 (120248716-120248245) | |
| 815-1296, gnl|monDom2|scaffold_53 (12126871-12126418) | |
| 815-1296, gnl|oryCun1|scaffold_148722 (17435-17865) | |
| 815-1296, gnl|panTro1|chr16 (40473441-40473895) | |
| 815-1296, gnl|rheMac2|chr7 (20842990-20843442) | |
| 815-1296, gnl|rn3|chr3 (106896475-106896915) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| isp (0.150376) | |
| ssp (0.13552) | |
| ldo (0.0970026) |