Non-Coding RNA Search

Ss1.1-rjca01c_a6.5

Sequence:


               
               CCCTGGACATTAAGGTTGCGGGTTCCACCCCTGGCCTTGCTCAGTGGGTTAAGGATCCAG
TGTTGCTGTGAGCTGTGGTGTATGTAGGTCGCAGACGCAGCTCGGATCTGGCATTGCTGT
GGCTGTGGTGTAGGCCAGCAGCTGTAGCTCTGATTAGACCCCTAGCCTGGGAATCTCCAT
ATACTGCAGGTGCGGCCCCAAAAAAGAAAAAAAGAAATTAAAAAGAAAGTAGCATATGTG
CTTTAAGAATATTATTAATCCTTTTGAAAAGAATTGAGAAGAGAAATGTATAATTTTATC
CCATTTTTAATATTTTGGTCTAGTAACTTGTGATACATAGATGACAATTTTGTGAGTTTT
TCAGATGTGTGTACAGATTTTTGTAAATACGACTCTTTTGTAATTAACTCATGTACAGCC
TCATCCTGTATAGTTTAACAATGAACGTGCAGGGGACCTGCCCCAGGCTTCTTTGTGGTG
CCTGGCCCTACAACCAGGCTTGTGTGACGTTCCCATGACTTTGTGACTGATTGGTGTGTC
TTCCCATGTGGACTATGGCCTGGCCAGAGACCCACCCCCGCACTCCCTTCCGTGGGGCAG
CCAGGACTGTTCCTGTCCTCCTAGAATGGGGGAGCCTTCTTCATTGCCCTGCCTATACCC
CTTCTCCAATAAAAACCTAAGCCCCCAGCAGCAGCTCACCATGTGCTGTTGCTGAGATGT
TTGTACTAAAATAAGCATGGAGGTGTTGATTTTTTTTTTTTTTTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCTGGACATTAAGGTTGCGGGTTCCACCCCTGGCCTTGCTCAGTGGGTTAAGGATCCAG
TGTTGCTGTGAGCTGTGGTGTATGTAGGTCGCAGACGCAGCTCGGATCTGGCATTGCTGT
GGCTGTGGTGTAGGCCAGCAGCTGTAGCTCTGATTAGACCCCTAGCCTGGGAATCTCCAT
ATACTGCAGGTGCGGCCCCAAAAAAGAAAAAAAGAAATTAAAAAGAAAGTAGCATATGTG
CTTTAAGAATATTATTAATCCTTTTGAAAAGAATTGAGAAGAGAAATGTATAATTTTATC
CCATTTTTAATATTTTGGTCTAGTAACTTGTGATACATAGATGACAATTTTGTGAGTTTT
TCAGATGTGTGTACAGATTTTTGTAAATACGACTCTTTTGTAATTAACTCATGTACAGCC
TCATCCTGTATAGTTTAACAATGAACGTGCAGGGGACCTGCCCCAGGCTTCTTTGTGGTG
CCTGGCCCTACAACCAGGCTTGTGTGACGTTCCCATGACTTTGTGACTGATTGGTGTGTC
TTCCCATGTGGACTATGGCCTGGCCAGAGACCCACCCCCGCACTCCCTTCCGTGGGGCAG
CCAGGACTGTTCCTGTCCTCCTAGAATGGGGGAGCCTTCTTCATTGCCCTGCCTATACCC
CTTCTCCAATAAAAACCTAAGCCCCCAGCAGCAGCTCACCATGTGCTGTTGCTGAGATGT
TTGTACTAAAATAAGCATGGAGGTGTTGATTTTTTTTTTTTTTTTTTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               575-734, - strand, RNAz p=0.999999

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               575-734, - strand, RNAz p=0.999999

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               592-730, 1266940 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN523444.1|), 
blast E-value=8e-22, identity=86.43% 
               

               
               592-730, 1270876 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN526136.1|), 
blast E-value=8e-22, identity=86.43% 
               

               
               592-730, 1317109 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN528552.1|), 
blast E-value=8e-22, identity=86.43% 
               

               
               592-730, 1318645 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN529951.1|), 
blast E-value=8e-22, identity=86.43% 
               

               
               592-730, 1372206 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN536130.1|), 
blast E-value=8e-22, identity=86.43% 
               

               
               592-730, 1373742 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN537548.1|), 
blast E-value=8e-22, identity=86.43%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               592-730, 1266940 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN523444.1|), 
blast E-value=8e-22, identity=86.43% 
               

               
               592-730, 1270876 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN526136.1|), 
blast E-value=8e-22, identity=86.43% 
               

               
               592-730, 1317109 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN528552.1|), 
blast E-value=8e-22, identity=86.43% 
               

               
               592-730, 1318645 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN529951.1|), 
blast E-value=8e-22, identity=86.43% 
               

               
               592-730, 1372206 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN536130.1|), 
blast E-value=8e-22, identity=86.43% 
               

               
               592-730, 1373742 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN537548.1|), 
blast E-value=8e-22, identity=86.43%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC012191, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC012191, -

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               222-734, gnl|bosTau2|chr11 (49536603-49537087)
               

               
               222-734, gnl|Hg17|chr16 (65739439-65739941)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               222-734, gnl|bosTau2|chr11 (49536603-49537087)
               

               
               222-734, gnl|Hg17|chr16 (65739439-65739941)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               sto (0.179824)
               

               
               eli (0.151814)
               

               
               cag (0.151194)
               

               
               csk (0.140746)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               ova (0.129132)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sto (0.179824)
               

               
               eli (0.151814)
               

               
               cag (0.151194)
               

               
               csk (0.140746)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               ova (0.129132)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

	592-730, 1266940 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb\|DN523444.1\|), blast E-value=8e-22, identity=86.43%
	592-730, 1270876 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb\|DN526136.1\|), blast E-value=8e-22, identity=86.43%
	592-730, 1317109 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb\|DN528552.1\|), blast E-value=8e-22, identity=86.43%
	592-730, 1318645 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb\|DN529951.1\|), blast E-value=8e-22, identity=86.43%
	592-730, 1372206 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb\|DN536130.1\|), blast E-value=8e-22, identity=86.43%
	592-730, 1373742 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb\|DN537548.1\|), blast E-value=8e-22, identity=86.43%

	222-734, gnl\|bosTau2\|chr11 (49536603-49537087)
	222-734, gnl\|Hg17\|chr16 (65739439-65739941)

	sto (0.179824)
	eli (0.151814)
	cag (0.151194)
	csk (0.140746)
	ssp (0.13552)
	pla (0.133672)
	cov (0.132153)
	ova (0.129132)
	jca (0.11396)
	ldo (0.0970026)