Ss1.1-rjca01c_f19.5
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
TCGAGCTCATCCTCATGGAGGAGATCCGCTTCCCGCGCACGCTCAGCCCCGAGGCCAAGT CCCTGCTCTCAGGGCTGCTCAAGAAGGACCCCAAGCAGCGGCTCGGCGGGGGCTCTGAGG ATGCCAAGGAGATCATGCAGCACCGTTTCTTCGCCAGCATCGTGTGGCAGGATGTGTATG AGAAGAAGCTCAGCCCACCGTTCAAGCCTCAGGTCACGTCCGAGACGGACACCAGGTATT TCGACGAGGAGTTCACGGCGCAGATGATCACCATCACGCCGCCCGACCAAGACGACAGCA TGGAGGGCGTGGACAGCGAGCGGAGGCCTCACTTCCCCCAGTTCTCCTACTCGGCCAGCG GCACGGCCTGAGGCGGCCAGCCGGGCGCGCTCTCCGGACGACGGCTTCGAAGGGAGGCGG GAAGCCGCGCTCGGACCTCCTGTATTTAATGGGTTTTGTTTCTGGACGCGTTTGGGCCGC ACCGGGCTGCTCCTCCCACCAGGGATGCGCGGCTCGCGCTGTGGCGGCTGTGGCGGGGGC TGCCCGCCCGGCCCCGGGCCGCCTCCCCAGCCTCCAGCCGGGCCGGGAGGAAAACGCCCT GCAGTTTCTCCTAATTTATTCATCCGGTTCTCCAGGCGCGGCCACGCGCCGCGCGCTCTC GGGCCGGGTGGGCCTCGCCCGCGCTCCCGGCCGCACCGACTCGGCCCGGAAGCAAGCCGG GCCAGGAGCGCCGGCCGGGGCCTGGCCGGGGCTGGAGGCGGGCGGCCCCTGCGTGGGGCT GGGCCGGGCGAGATCCTGCTCTGTTCACGCGCGTCCTGGGGGCTTCATCTCAGAAGGAAG CCCCCCTCTGCCCCTGCCCGTTGGGACCATCCCATCCGATGGCTCCCCTGGTTAGCAATT GTCCTCATAGAAGCTTCACCCTCCCGCTGTCGCCGCGGCCCCGCCCCACGCCCTTTGCAG GGGCCATCGCTCCGCCCTCCGGCCAGACGCTACGCTGCACCACGGCGGTTTTTTATATTC AACTTTAGTATTTTTACTATTATGAGACTTTCCCTCCAAATTCCTCAATAAAACTTGCTT TTCAAAAAAAAAAAAAAAAAAAAA |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
TCGAGCTCATCCTCATGGAGGAGATCCGCTTCCCGCGCACGCTCAGCCCCGAGGCCAAGT CCCTGCTCTCAGGGCTGCTCAAGAAGGACCCCAAGCAGCGGCTCGGCGGGGGCTCTGAGG ATGCCAAGGAGATCATGCAGCACCGTTTCTTCGCCAGCATCGTGTGGCAGGATGTGTATG AGAAGAAGCTCAGCCCACCGTTCAAGCCTCAGGTCACGTCCGAGACGGACACCAGGTATT TCGACGAGGAGTTCACGGCGCAGATGATCACCATCACGCCGCCCGACCAAGACGACAGCA TGGAGGGCGTGGACAGCGAGCGGAGGCCTCACTTCCCCCAGTTCTCCTACTCGGCCAGCG GCACGGCCTGAGGCGGCCAGCCGGGCGCGCTCTCCGGACGACGGCTTCGAAGGGAGGCGG GAAGCCGCGCTCGGACCTCCTGTATTTAATGGGTTTTGTTTCTGGACGCGTTTGGGCCGC ACCGGGCTGCTCCTCCCACCAGGGATGCGCGGCTCGCGCTGTGGCGGCTGTGGCGGGGGC TGCCCGCCCGGCCCCGGGCCGCCTCCCCAGCCTCCAGCCGGGCCGGGAGGAAAACGCCCT GCAGTTTCTCCTAATTTATTCATCCGGTTCTCCAGGCGCGGCCACGCGCCGCGCGCTCTC GGGCCGGGTGGGCCTCGCCCGCGCTCCCGGCCGCACCGACTCGGCCCGGAAGCAAGCCGG GCCAGGAGCGCCGGCCGGGGCCTGGCCGGGGCTGGAGGCGGGCGGCCCCTGCGTGGGGCT GGGCCGGGCGAGATCCTGCTCTGTTCACGCGCGTCCTGGGGGCTTCATCTCAGAAGGAAG CCCCCCTCTGCCCCTGCCCGTTGGGACCATCCCATCCGATGGCTCCCCTGGTTAGCAATT GTCCTCATAGAAGCTTCACCCTCCCGCTGTCGCCGCGGCCCCGCCCCACGCCCTTTGCAG GGGCCATCGCTCCGCCCTCCGGCCAGACGCTACGCTGCACCACGGCGGTTTTTTATATTC AACTTTAGTATTTTTACTATTATGAGACTTTCCCTCCAAATTCCTCAATAAAACTTGCTT TTCAAAAAAAAAAAAAAAAAAAAA |
Coded protein: 1 entry(ies) | More info |
Predicted RNA structure(s): 1 entry(ies) | More info |
Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
928-1025, - strand, RNAz p=0.920995 |
Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
928-1025, - strand, RNAz p=0.920995 |
Aligned organism(s): 43 entry(ies) | More info |
Aligned organism(s): 43 entry(ies) | Help | Less info |
1-101, gnl|bosTau2|chr18 (41339277-41339177) | |
1-101, gnl|canFam2|chr1 (116313561-116313467) | |
1-101, gnl|danRer3|chr18 (42665327-42665232) | |
1-101, gnl|dasNov1|scaffold_9481 (4574-4668) | |
1-101, gnl|echTel1|scaffold_246360 (5783-5870) | |
1-101, gnl|fr1|chrUn (190293456-190293366) | |
1-101, gnl|galGal2|chr5 (48393774-48393868) | |
1-101, gnl|hg17|chr19 (45433632-45433726) | |
1-101, gnl|Hg17|chr19 (45433736-45433636) | |
1-101, gnl|loxAfr1|scaffold_151926 (4028-4096) | |
1-101, gnl|mm7|chr7 (24555788-24555694) | |
1-101, gnl|Mm7|chr7 (24555682-24555782) | |
1-101, gnl|monDom2|scaffold_149 (42018-42112) | |
1-101, gnl|oryCun1|scaffold_145419 (9132-9225) | |
1-101, gnl|panTro1|chr20 (42368642-42368736) | |
1-101, gnl|rheMac2|chr19 (46592303-46592397) | |
1-101, gnl|rn3|chr1 (82802727-82802633) | |
1-101, gnl|tetNig1|chrUn_random (15250493-15250398) | |
1-101, gnl|xenTro1|scaffold_886 (414375-414282) | |
187-291, gnl|bosTau2|chr21 (48953995-48954099) | |
187-291, gnl|canFam2|chr8 (75362987-75363115) | |
187-291, gnl|danRer3|chr15 (6219218-6219324) | |
187-291, gnl|dasNov1|scaffold_4625 (36924-37028) | |
187-291, gnl|echTel1|scaffold_297634 (3106-2973) | |
187-291, gnl|fr1|chrUn (60050314-60050442) | |
187-291, gnl|hg17|chr14 (104308126-104308253) | |
187-291, gnl|Hg17|chr14 (104308231-104308127) | |
187-291, gnl|loxAfr1|scaffold_45590 (15101-15228) | |
187-291, gnl|mm7|chr12 (110180071-110180196) | |
187-291, gnl|Mm7|chr12 (110180176-110180072) | |
187-291, gnl|monDom2|scaffold_149 (41072-41256) | |
187-291, gnl|oryCun1|scaffold_145419 (8706-8818) | |
187-291, gnl|panTro1|chr15 (104993178-104993305) | |
187-291, gnl|rheMac2|chr7 (168150149-168150276) | |
187-291, gnl|rn3|chr6 (137647315-137647440) | |
187-291, gnl|tetNig1|chr10 (3847803-3847919) | |
187-291, gnl|xenTro1|scaffold_804 (148119-148008) | |
392-646, gnl|bosTau2|chr21 (48954598-48954841) | |
392-646, gnl|Hg17|chr14 (104307707-104307478) | |
392-646, gnl|Mm7|chr12 (110179613-110179394) | |
781-1083, gnl|bosTau2|chr21 (48955112-48955421) | |
781-1083, gnl|Hg17|chr14 (104307115-104306734) | |
781-1083, gnl|Mm7|chr12 (110179108-110178773) |
Aligned organism(s): 43 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
1-101, gnl|bosTau2|chr18 (41339277-41339177) | |
1-101, gnl|canFam2|chr1 (116313561-116313467) | |
1-101, gnl|danRer3|chr18 (42665327-42665232) | |
1-101, gnl|dasNov1|scaffold_9481 (4574-4668) | |
1-101, gnl|echTel1|scaffold_246360 (5783-5870) | |
1-101, gnl|fr1|chrUn (190293456-190293366) | |
1-101, gnl|galGal2|chr5 (48393774-48393868) | |
1-101, gnl|hg17|chr19 (45433632-45433726) | |
1-101, gnl|Hg17|chr19 (45433736-45433636) | |
1-101, gnl|loxAfr1|scaffold_151926 (4028-4096) | |
1-101, gnl|mm7|chr7 (24555788-24555694) | |
1-101, gnl|Mm7|chr7 (24555682-24555782) | |
1-101, gnl|monDom2|scaffold_149 (42018-42112) | |
1-101, gnl|oryCun1|scaffold_145419 (9132-9225) | |
1-101, gnl|panTro1|chr20 (42368642-42368736) | |
1-101, gnl|rheMac2|chr19 (46592303-46592397) | |
1-101, gnl|rn3|chr1 (82802727-82802633) | |
1-101, gnl|tetNig1|chrUn_random (15250493-15250398) | |
1-101, gnl|xenTro1|scaffold_886 (414375-414282) | |
187-291, gnl|bosTau2|chr21 (48953995-48954099) | |
187-291, gnl|canFam2|chr8 (75362987-75363115) | |
187-291, gnl|danRer3|chr15 (6219218-6219324) | |
187-291, gnl|dasNov1|scaffold_4625 (36924-37028) | |
187-291, gnl|echTel1|scaffold_297634 (3106-2973) | |
187-291, gnl|fr1|chrUn (60050314-60050442) | |
187-291, gnl|hg17|chr14 (104308126-104308253) | |
187-291, gnl|Hg17|chr14 (104308231-104308127) | |
187-291, gnl|loxAfr1|scaffold_45590 (15101-15228) | |
187-291, gnl|mm7|chr12 (110180071-110180196) | |
187-291, gnl|Mm7|chr12 (110180176-110180072) | |
187-291, gnl|monDom2|scaffold_149 (41072-41256) | |
187-291, gnl|oryCun1|scaffold_145419 (8706-8818) | |
187-291, gnl|panTro1|chr15 (104993178-104993305) | |
187-291, gnl|rheMac2|chr7 (168150149-168150276) | |
187-291, gnl|rn3|chr6 (137647315-137647440) | |
187-291, gnl|tetNig1|chr10 (3847803-3847919) | |
187-291, gnl|xenTro1|scaffold_804 (148119-148008) | |
392-646, gnl|bosTau2|chr21 (48954598-48954841) | |
392-646, gnl|Hg17|chr14 (104307707-104307478) | |
392-646, gnl|Mm7|chr12 (110179613-110179394) | |
781-1083, gnl|bosTau2|chr21 (48955112-48955421) | |
781-1083, gnl|Hg17|chr14 (104307115-104306734) | |
781-1083, gnl|Mm7|chr12 (110179108-110178773) |
Expressed library(ies): 10 entry(ies) | More info |
Expressed library(ies): 10 entry(ies) | Help | Less info |
cov (0.396458) | |
csp (0.322373) | |
cga (0.279096) | |
med (0.232504) | |
jca (0.22792) | |
mcp (0.170648) | |
nco (0.161734) | |
lnt (0.142308) | |
eep (0.122564) | |
ebs (0.118301) |
Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
cov (0.396458) | |
csp (0.322373) | |
cga (0.279096) | |
med (0.232504) | |
jca (0.22792) | |
mcp (0.170648) | |
nco (0.161734) | |
lnt (0.142308) | |
eep (0.122564) | |
ebs (0.118301) |