Non-Coding RNA Search

Ss1.1-rjca01c_g18.5

Sequence:


               
               AAAAAAAAAAAAAGACTCATCAGAAACCAAAGATCTAAATTGCCTATGAGATTTGTGGTT
ATTTCTTTCCTAAAGCTCCTAGGGACTGCCCTTGAATATTTTTTTTTCTGCATTTTACCA
AAGAAGGAACAAAGAGGGGAAAACAACAGTCCATAACATCCTCTTGGGAAGTCAGTACTC
TAAAATCTAGAAGAAAACAGACATATAGCAGGATGATAATGTCACAGGTTGAAAGCCAGA
GAAATTTTAAACTACCAACATCCTTGTTAGAATAAGACAGTAAATACCATCCTTGCAGCA
AGAAAGCTCTAAGCAGCTGGGGGTGAAGAGGTAAATGGTGCTGGTGGGAGGAAGTTGCCT
TCAGTTTAAGAATAAGAATTGTGGGATCCAGTTTGGGAGACTCTTCATATTGACAAAGCA
AAAAGTCAGATGGTAACAAACTTATTATATGTCAAATGAATAAATGTTGCTTTCAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAAAAAAAAAGACTCATCAGAAACCAAAGATCTAAATTGCCTATGAGATTTGTGGTT
ATTTCTTTCCTAAAGCTCCTAGGGACTGCCCTTGAATATTTTTTTTTCTGCATTTTACCA
AAGAAGGAACAAAGAGGGGAAAACAACAGTCCATAACATCCTCTTGGGAAGTCAGTACTC
TAAAATCTAGAAGAAAACAGACATATAGCAGGATGATAATGTCACAGGTTGAAAGCCAGA
GAAATTTTAAACTACCAACATCCTTGTTAGAATAAGACAGTAAATACCATCCTTGCAGCA
AGAAAGCTCTAAGCAGCTGGGGGTGAAGAGGTAAATGGTGCTGGTGGGAGGAAGTTGCCT
TCAGTTTAAGAATAAGAATTGTGGGATCCAGTTTGGGAGACTCTTCATATTGACAAAGCA
AAAAGTCAGATGGTAACAAACTTATTATATGTCAAATGAATAAATGTTGCTTTCAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               273-374, - strand, RNAz p=0.938035

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               273-374, - strand, RNAz p=0.938035

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               13-475, gnl|bosTau2|chr2 (15360834-15360372)
               

               
               13-475, gnl|canFam2|chr36 (20534007-20534621)
               

               
               13-475, gnl|dasNov1|scaffold_15641 (43144-43754)
               

               
               13-475, gnl|echTel1|scaffold_319373 (92795-92129)
               

               
               13-475, gnl|hg17|chr2 (173957656-173958266)
               

               
               13-475, gnl|Hg17|chr2 (173957786-173958241)
               

               
               13-475, gnl|loxAfr1|scaffold_35971 (4014-4716)
               

               
               13-475, gnl|mm7|chr2 (72286217-72286806)
               

               
               13-475, gnl|Mm7|chr2 (72286353-72286781)
               

               
               13-475, gnl|monDom2|scaffold_2 (72457353-72457928)
               

               
               13-475, gnl|oryCun1|scaffold_211167 (60693-61282)
               

               
               13-475, gnl|panTro1|chr13 (63598843-63599453)
               

               
               13-475, gnl|rheMac2|chr12 (36895760-36896373)
               

               
               13-475, gnl|rn3|chr3 (54811294-54811911)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-475, gnl|bosTau2|chr2 (15360834-15360372)
               

               
               13-475, gnl|canFam2|chr36 (20534007-20534621)
               

               
               13-475, gnl|dasNov1|scaffold_15641 (43144-43754)
               

               
               13-475, gnl|echTel1|scaffold_319373 (92795-92129)
               

               
               13-475, gnl|hg17|chr2 (173957656-173958266)
               

               
               13-475, gnl|Hg17|chr2 (173957786-173958241)
               

               
               13-475, gnl|loxAfr1|scaffold_35971 (4014-4716)
               

               
               13-475, gnl|mm7|chr2 (72286217-72286806)
               

               
               13-475, gnl|Mm7|chr2 (72286353-72286781)
               

               
               13-475, gnl|monDom2|scaffold_2 (72457353-72457928)
               

               
               13-475, gnl|oryCun1|scaffold_211167 (60693-61282)
               

               
               13-475, gnl|panTro1|chr13 (63598843-63599453)
               

               
               13-475, gnl|rheMac2|chr12 (36895760-36896373)
               

               
               13-475, gnl|rn3|chr3 (54811294-54811911)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               nbm (0.198649)
               

               
               bfe (0.149858)
               

               
               jca (0.11396)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nbm (0.198649)
               

               
               bfe (0.149858)
               

               
               jca (0.11396)

	13-475, gnl\|bosTau2\|chr2 (15360834-15360372)
	13-475, gnl\|canFam2\|chr36 (20534007-20534621)
	13-475, gnl\|dasNov1\|scaffold_15641 (43144-43754)
	13-475, gnl\|echTel1\|scaffold_319373 (92795-92129)
	13-475, gnl\|hg17\|chr2 (173957656-173958266)
	13-475, gnl\|Hg17\|chr2 (173957786-173958241)
	13-475, gnl\|loxAfr1\|scaffold_35971 (4014-4716)
	13-475, gnl\|mm7\|chr2 (72286217-72286806)
	13-475, gnl\|Mm7\|chr2 (72286353-72286781)
	13-475, gnl\|monDom2\|scaffold_2 (72457353-72457928)
	13-475, gnl\|oryCun1\|scaffold_211167 (60693-61282)
	13-475, gnl\|panTro1\|chr13 (63598843-63599453)
	13-475, gnl\|rheMac2\|chr12 (36895760-36896373)
	13-475, gnl\|rn3\|chr3 (54811294-54811911)