Non-Coding RNA Search

Ss1.1-rjca01c_g2.5

Sequence:


               
               GTCATTGCCATCCCGCACGCCTCCGAGCACACCCCGGTCTTCATCAAACTCCCCAGCAAT
GGGTGCTACATGCTGCCCCTGCCCATCTCCAAGGAGCGAGCTCTGCTGCCCGGAGACATG
GGCTGCCGCCTGCTGCCCGGAAGCCAGCAGAAGTCCGTCACCGTGGTGACCATCCCCGCG
GAGCAGCAGCCTCTGCAGGGCGGGGTTCCGGCCGAGGCCGCAGAGGAGGAGCAAGACAGG
CGGGGCGCCGTGAAAAGCTCCACCTGGTCCGGGGTGTGCACTGTGATCCTGGTGGCCTGC
GTCCTGGTCTTCCTTCTCGGCATCGTGCTCCACAACATGTCCTGCATTTCTAAGCGCTTC
ACCGTGATATCCTGTGGCTGAAGGGGGCTGCCGAAAAGTCTCTTGTGGGTGCCAACTAGG
GGTTGAGCTGGTGTTGGTGATGGATCGCGGTGAGAAGATGGGGGGCCCGAGTGTTGACCT
CTGGGCTGCCACTTGATTAACCCAAGACAGATAGGAAGGGCAGAACGTGCTATCTCAGCA
AGATAACTAAGCAGATCACTCTGATTACTGGTGGCAACAGCTTTGAAGACGATTGCATGC
ATCCTCATAATCATGTATTAAAAGGACTGTAATTTATGATTTTTCCCAATCATGTTACGA
GATAGACATATTCTTAGACGTTAAACTGTGGAAATGCATACAATGTGATCTTCTCTAAAT
GTGGTAGATTAAAACAAAGATGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCATTGCCATCCCGCACGCCTCCGAGCACACCCCGGTCTTCATCAAACTCCCCAGCAAT
GGGTGCTACATGCTGCCCCTGCCCATCTCCAAGGAGCGAGCTCTGCTGCCCGGAGACATG
GGCTGCCGCCTGCTGCCCGGAAGCCAGCAGAAGTCCGTCACCGTGGTGACCATCCCCGCG
GAGCAGCAGCCTCTGCAGGGCGGGGTTCCGGCCGAGGCCGCAGAGGAGGAGCAAGACAGG
CGGGGCGCCGTGAAAAGCTCCACCTGGTCCGGGGTGTGCACTGTGATCCTGGTGGCCTGC
GTCCTGGTCTTCCTTCTCGGCATCGTGCTCCACAACATGTCCTGCATTTCTAAGCGCTTC
ACCGTGATATCCTGTGGCTGAAGGGGGCTGCCGAAAAGTCTCTTGTGGGTGCCAACTAGG
GGTTGAGCTGGTGTTGGTGATGGATCGCGGTGAGAAGATGGGGGGCCCGAGTGTTGACCT
CTGGGCTGCCACTTGATTAACCCAAGACAGATAGGAAGGGCAGAACGTGCTATCTCAGCA
AGATAACTAAGCAGATCACTCTGATTACTGGTGGCAACAGCTTTGAAGACGATTGCATGC
ATCCTCATAATCATGTATTAAAAGGACTGTAATTTATGATTTTTCCCAATCATGTTACGA
GATAGACATATTCTTAGACGTTAAACTGTGGAAATGCATACAATGTGATCTTCTCTAAAT
GTGGTAGATTAAAACAAAGATGCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|62739669|gb|AAH94004.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|62739669|gb|AAH94004.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               41-160, - strand, RNAz p=0.604579
               

               
               358-466, + strand, RNAz p=0.936364

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-160, - strand, RNAz p=0.604579
               

               
               358-466, + strand, RNAz p=0.936364

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_173557, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_173557, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-744, gnl|bosTau2|chr24 (44585837-44585069)
               

               
               1-744, gnl|Hg17|chr18 (57634445-57633682)
               

               
               1-744, gnl|Mm7|chr1 (105183783-105183031)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-744, gnl|bosTau2|chr24 (44585837-44585069)
               

               
               1-744, gnl|Hg17|chr18 (57634445-57633682)
               

               
               1-744, gnl|Mm7|chr1 (105183783-105183031)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ssp (0.13552)
               

               
               jca (0.11396)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ssp (0.13552)
               

               
               jca (0.11396)

	41-160, - strand, RNAz p=0.604579
	358-466, + strand, RNAz p=0.936364

	1-744, gnl\|bosTau2\|chr24 (44585837-44585069)
	1-744, gnl\|Hg17\|chr18 (57634445-57633682)
	1-744, gnl\|Mm7\|chr1 (105183783-105183031)