Non-Coding RNA Search

Ss1.1-rjca01c_i16.5

Sequence:


               
               CAAAAATGCTTTTCAACAGAAGAATATTTCAAAGCAAACAAACTTTGCTATTTTTGTTTG
TTCTGGGGCAGTTCACTTAAGAAAAAAACATTTTTCTATAATTTTACTTATCTATAATTC
TTTCTCTCTAGTGGCCATTTTCCTATCATTAGTCTTAAATGTTTTACTAAATGTGAACGC
CACTTCACAGACACGGTCATCACCACACAGTACACAGAGGAGTCAAATTTATTAGAAGTC
TGTTCTTACCAAGGAGAGAATAAGATAAATTCCATGTCAGTTTTTTGGGTTTGTTTCTTT
GTTTTCTTTTTTAAATAAGATATATTAACCCAAAGGTATGTTAACGTCATGGCATGAACA
ATCTTAAATGTAGATCTTTATTGAGTATTTTGTGCTGTTAAGTAACAAGACTTTTCTCAG
ATCTCTGTGATGCTAAATATTTTCCTTAGAAGGTTTTGGTTTAATGTTAGATTGTTGTTC
TGAAAGATGTTGGTCCTAGTGGGATTTTTTAAAAACCAAGAGAACAAATAAACGCATGTA
TTATGAGTATAGAAATGGTGAATTGTAAACTTACCGTATAGTACTGATTCTATTTTCAAA
AATGTTTTTGCTGTTAAATATATACAACATAAAATTGCTGCCGTACTGTAATTGAGTACT
TTTTTCCTAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAAAATGCTTTTCAACAGAAGAATATTTCAAAGCAAACAAACTTTGCTATTTTTGTTTG
TTCTGGGGCAGTTCACTTAAGAAAAAAACATTTTTCTATAATTTTACTTATCTATAATTC
TTTCTCTCTAGTGGCCATTTTCCTATCATTAGTCTTAAATGTTTTACTAAATGTGAACGC
CACTTCACAGACACGGTCATCACCACACAGTACACAGAGGAGTCAAATTTATTAGAAGTC
TGTTCTTACCAAGGAGAGAATAAGATAAATTCCATGTCAGTTTTTTGGGTTTGTTTCTTT
GTTTTCTTTTTTAAATAAGATATATTAACCCAAAGGTATGTTAACGTCATGGCATGAACA
ATCTTAAATGTAGATCTTTATTGAGTATTTTGTGCTGTTAAGTAACAAGACTTTTCTCAG
ATCTCTGTGATGCTAAATATTTTCCTTAGAAGGTTTTGGTTTAATGTTAGATTGTTGTTC
TGAAAGATGTTGGTCCTAGTGGGATTTTTTAAAAACCAAGAGAACAAATAAACGCATGTA
TTATGAGTATAGAAATGGTGAATTGTAAACTTACCGTATAGTACTGATTCTATTTTCAAA
AATGTTTTTGCTGTTAAATATATACAACATAAAATTGCTGCCGTACTGTAATTGAGTACT
TTTTTCCTAAAT

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-672, gnl|bosTau2|chr27 (14144049-14144724)
               

               
               1-672, gnl|Hg17|chr8 (30974781-30974114)
               

               
               1-672, gnl|Mm7|chr8 (32183419-32184079)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-672, gnl|bosTau2|chr27 (14144049-14144724)
               

               
               1-672, gnl|Hg17|chr8 (30974781-30974114)
               

               
               1-672, gnl|Mm7|chr8 (32183419-32184079)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cbr (0.383926)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (0.383926)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)

	1-672, gnl\|bosTau2\|chr27 (14144049-14144724)
	1-672, gnl\|Hg17\|chr8 (30974781-30974114)
	1-672, gnl\|Mm7\|chr8 (32183419-32184079)