Ss1.1-rjca01c_i2.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCCAATATGTCAAGACCTCTGATCACCAGATCTCCTGCCTCGCCCCTGAACAACCAAGG CATTCCTACTCCAGCCCAGCTCACAAAATCCAATGCACCCGTCCACATTGATGTGGGCGG CCACATGTACACCAGCAGCCTGGCCACCCTCACCAAATACCCTGAATCCAGAATCGGAAG ACTTTTTGATGGTACAGAGCCAATTGTTTTGGACAGTCTCAAACAGCACTATTTCATTGA CAGAGATGGACAGATGTTCAGATATATCTTGAATTTTCTACGAACATCAAAACTCCTCAT TCCTGATGATTTCAAGGACTACACTTTGTTATACGAAGAGGCAAAATATTTTCAGCTTCA GCCCATGCTGTTGGAGATGGAAAGATGGAAACAGGACAGAGAAAGTGGCCGCTTTTCGAG GCCCTGTGAGTGCCTGGTGGTGCGTGTTGCCCCAGACCTCGGAGAAAGGATCACGCTCAG TGGTGACAAATCCTTGATAGAGGAAGTGTTTCCAGAAATCGGCGATGTGATGTGTAACTC TGTCAACGCAGGCTGGAATCACGACTCCACGCACGTCATCAGGTTCCCACTGAATGGCTA CTGTCACCTCAACTCAGTGCAGGTCCTCGAGAGGTTGCAGCAAAGAGGGTTTGAAATCGT GGGCTCCTGCGGGGGAGGAGTGGACTCATCTCAGTTCAGCGAATACGTCCTGCGGCGGGA GCTGAGGCGGACACCCCGCGGACCCTCCGTCATCCGGATAAAGCAAGAGCCTCTGGACTA AGTGGACGTATTTCTTATGCAAAAAGGAAGAAAACATACTTATGACGCAAACAGAAAAAA GGGACATTTATGTGCAGTTGGGACAGCACACCAAGTCCTGGACCTAAAATTGAATAAAAG ACACATTTATATCCAATAGAGACCACACCTGTATTCATATGGGAACAATTGGAATAGTGA TATCCTCGAGGTGTAAAAAATATATAAATATATATA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCCAATATGTCAAGACCTCTGATCACCAGATCTCCTGCCTCGCCCCTGAACAACCAAGG CATTCCTACTCCAGCCCAGCTCACAAAATCCAATGCACCCGTCCACATTGATGTGGGCGG CCACATGTACACCAGCAGCCTGGCCACCCTCACCAAATACCCTGAATCCAGAATCGGAAG ACTTTTTGATGGTACAGAGCCAATTGTTTTGGACAGTCTCAAACAGCACTATTTCATTGA CAGAGATGGACAGATGTTCAGATATATCTTGAATTTTCTACGAACATCAAAACTCCTCAT TCCTGATGATTTCAAGGACTACACTTTGTTATACGAAGAGGCAAAATATTTTCAGCTTCA GCCCATGCTGTTGGAGATGGAAAGATGGAAACAGGACAGAGAAAGTGGCCGCTTTTCGAG GCCCTGTGAGTGCCTGGTGGTGCGTGTTGCCCCAGACCTCGGAGAAAGGATCACGCTCAG TGGTGACAAATCCTTGATAGAGGAAGTGTTTCCAGAAATCGGCGATGTGATGTGTAACTC TGTCAACGCAGGCTGGAATCACGACTCCACGCACGTCATCAGGTTCCCACTGAATGGCTA CTGTCACCTCAACTCAGTGCAGGTCCTCGAGAGGTTGCAGCAAAGAGGGTTTGAAATCGT GGGCTCCTGCGGGGGAGGAGTGGACTCATCTCAGTTCAGCGAATACGTCCTGCGGCGGGA GCTGAGGCGGACACCCCGCGGACCCTCCGTCATCCGGATAAAGCAAGAGCCTCTGGACTA AGTGGACGTATTTCTTATGCAAAAAGGAAGAAAACATACTTATGACGCAAACAGAAAAAA GGGACATTTATGTGCAGTTGGGACAGCACACCAAGTCCTGGACCTAAAATTGAATAAAAG ACACATTTATATCCAATAGAGACCACACCTGTATTCATATGGGAACAATTGGAATAGTGA TATCCTCGAGGTGTAAAAAATATATAAATATATATA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 24-171, gnl|bosTau2|chr18 (37286598-37286745) | |
| 24-171, gnl|canFam2|chr1 (121340392-121340018) | |
| 24-171, gnl|danRer3|chr25 (8747496-8747118) | |
| 24-171, gnl|dasNov1|scaffold_67312 (2400-2031) | |
| 24-171, gnl|echTel1|scaffold_290996 (2330-2695) | |
| 24-171, gnl|fr1|chrUn (121429383-121429769) | |
| 24-171, gnl|galGal2|chr11 (10946672-10947025) | |
| 24-171, gnl|hg17|chr19 (38983715-38984106) | |
| 24-171, gnl|Hg17|chr19 (38983940-38984087) | |
| 24-171, gnl|loxAfr1|scaffold_26636 (7457-7827) | |
| 24-171, gnl|mm7|chr7 (31537783-31537428) | |
| 24-171, gnl|Mm7|chr7 (31537591-31537444) | |
| 24-171, gnl|monDom2|scaffold_35 (2058818-2058447) | |
| 24-171, gnl|oryCun1|scaffold_191922 (7440-7070) | |
| 24-171, gnl|panTro1|chr20 (35514153-35514523) | |
| 24-171, gnl|rheMac2|chr19 (40339598-40339968) | |
| 24-171, gnl|rn3|chr1 (87206235-87205881) | |
| 24-171, gnl|tetNig1|chrUn_random (36083121-36082748) | |
| 24-171, gnl|xenTro1|scaffold_129 (1385821-1386171) | |
| 315-624, gnl|bosTau2|chr18 (37294170-37294479) | |
| 315-624, gnl|canFam2|chr1 (121332542-121332203) | |
| 315-624, gnl|danRer3|chr25 (8736162-8735805) | |
| 315-624, gnl|dasNov1|scaffold_64397 (6511-6826) | |
| 315-624, gnl|echTel1|scaffold_320958 (1439-1755) | |
| 315-624, gnl|fr1|chrUn (121437370-121437710) | |
| 315-624, gnl|galGal2|chr11 (10974432-10974754) | |
| 315-624, gnl|hg17|chr19 (38993947-38994306) | |
| 315-624, gnl|Hg17|chr19 (38993990-38994299) | |
| 315-624, gnl|loxAfr1|scaffold_26636 (16158-16494) | |
| 315-624, gnl|mm7|chr7 (31529619-31529289) | |
| 315-624, gnl|Mm7|chr7 (31529603-31529294) | |
| 315-624, gnl|monDom2|scaffold_35 (2048240-2047920) | |
| 315-624, gnl|oryCun1|scaffold_191922 (737-403) | |
| 315-624, gnl|panTro1|chr20 (35523112-35523454) | |
| 315-624, gnl|rheMac2|chr19 (40349929-40350271) | |
| 315-624, gnl|rn3|chr1 (87198576-87198246) | |
| 315-624, gnl|tetNig1|chrUn_random (36071968-36071655) | |
| 315-624, gnl|xenTro1|scaffold_129 (1399255-1399572) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 24-171, gnl|bosTau2|chr18 (37286598-37286745) | |
| 24-171, gnl|canFam2|chr1 (121340392-121340018) | |
| 24-171, gnl|danRer3|chr25 (8747496-8747118) | |
| 24-171, gnl|dasNov1|scaffold_67312 (2400-2031) | |
| 24-171, gnl|echTel1|scaffold_290996 (2330-2695) | |
| 24-171, gnl|fr1|chrUn (121429383-121429769) | |
| 24-171, gnl|galGal2|chr11 (10946672-10947025) | |
| 24-171, gnl|hg17|chr19 (38983715-38984106) | |
| 24-171, gnl|Hg17|chr19 (38983940-38984087) | |
| 24-171, gnl|loxAfr1|scaffold_26636 (7457-7827) | |
| 24-171, gnl|mm7|chr7 (31537783-31537428) | |
| 24-171, gnl|Mm7|chr7 (31537591-31537444) | |
| 24-171, gnl|monDom2|scaffold_35 (2058818-2058447) | |
| 24-171, gnl|oryCun1|scaffold_191922 (7440-7070) | |
| 24-171, gnl|panTro1|chr20 (35514153-35514523) | |
| 24-171, gnl|rheMac2|chr19 (40339598-40339968) | |
| 24-171, gnl|rn3|chr1 (87206235-87205881) | |
| 24-171, gnl|tetNig1|chrUn_random (36083121-36082748) | |
| 24-171, gnl|xenTro1|scaffold_129 (1385821-1386171) | |
| 315-624, gnl|bosTau2|chr18 (37294170-37294479) | |
| 315-624, gnl|canFam2|chr1 (121332542-121332203) | |
| 315-624, gnl|danRer3|chr25 (8736162-8735805) | |
| 315-624, gnl|dasNov1|scaffold_64397 (6511-6826) | |
| 315-624, gnl|echTel1|scaffold_320958 (1439-1755) | |
| 315-624, gnl|fr1|chrUn (121437370-121437710) | |
| 315-624, gnl|galGal2|chr11 (10974432-10974754) | |
| 315-624, gnl|hg17|chr19 (38993947-38994306) | |
| 315-624, gnl|Hg17|chr19 (38993990-38994299) | |
| 315-624, gnl|loxAfr1|scaffold_26636 (16158-16494) | |
| 315-624, gnl|mm7|chr7 (31529619-31529289) | |
| 315-624, gnl|Mm7|chr7 (31529603-31529294) | |
| 315-624, gnl|monDom2|scaffold_35 (2048240-2047920) | |
| 315-624, gnl|oryCun1|scaffold_191922 (737-403) | |
| 315-624, gnl|panTro1|chr20 (35523112-35523454) | |
| 315-624, gnl|rheMac2|chr19 (40349929-40350271) | |
| 315-624, gnl|rn3|chr1 (87198576-87198246) | |
| 315-624, gnl|tetNig1|chrUn_random (36071968-36071655) | |
| 315-624, gnl|xenTro1|scaffold_129 (1399255-1399572) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| cki (0.330469) | |
| fcc (0.197785) | |
| sag (0.182715) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| ste (0.135208) | |
| lyg (0.133103) | |
| eep (0.122564) | |
| jca (0.11396) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cki (0.330469) | |
| fcc (0.197785) | |
| sag (0.182715) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| ste (0.135208) | |
| lyg (0.133103) | |
| eep (0.122564) | |
| jca (0.11396) |