Non-Coding RNA Search

Ss1.1-rjca01c_i23.5

Sequence:


               
               GGAGCACTACCGCTTCGTGAGCATGTGGATGGCACGCACGTCCTACCTGGCCGCCTTTGT
CATCATGGTCATTTTCACCCTGAGTGTGTCCATGCTGCTGCGCTACTCCCACCATCAGAT
CTTTGTCTTCATTGTGGACCTGCTGCAGATGCTGGAGATGAACATGGCCATCGCCTTCCC
CGCAGCACCCCTGCTGACCGTCATCCTGGCCCTCGTGGGGATGGAGGCCATCATGTCCGA
GTTCTTCAACGACACCACCACAGCCTTCTACATCATCCTCATCGTGTGGCTGGCCGACCA
GTATGACGCCATCTGCTGTCACACCAACACCAGCAAGCGGCACTGGCTTCGGTTCTTCTA
CCTGTACCACTTCGCCTTCTATGCTTACCACTACCGCTTCAACGGGCAGTATAGCAGCCT
GGCCCTGGTCACCTCCTGGCTCTTCATCCAGGTGAGGGGGCTGCCCTGGGGGACTTCACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGCACTACCGCTTCGTGAGCATGTGGATGGCACGCACGTCCTACCTGGCCGCCTTTGT
CATCATGGTCATTTTCACCCTGAGTGTGTCCATGCTGCTGCGCTACTCCCACCATCAGAT
CTTTGTCTTCATTGTGGACCTGCTGCAGATGCTGGAGATGAACATGGCCATCGCCTTCCC
CGCAGCACCCCTGCTGACCGTCATCCTGGCCCTCGTGGGGATGGAGGCCATCATGTCCGA
GTTCTTCAACGACACCACCACAGCCTTCTACATCATCCTCATCGTGTGGCTGGCCGACCA
GTATGACGCCATCTGCTGTCACACCAACACCAGCAAGCGGCACTGGCTTCGGTTCTTCTA
CCTGTACCACTTCGCCTTCTATGCTTACCACTACCGCTTCAACGGGCAGTATAGCAGCCT
GGCCCTGGTCACCTCCTGGCTCTTCATCCAGGTGAGGGGGCTGCCCTGGGGGACTTCACA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5TSR9_ANOGA

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5TSR9_ANOGA

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               218-353, gnl|bosTau2|chr7 (10284215-10284080)
               

               
               218-353, gnl|canFam2|chr20 (60842543-60842425)
               

               
               218-353, gnl|danRer3|chrUn (59930079-59930196)
               

               
               218-353, gnl|fr1|chrUn (240112428-240112556)
               

               
               218-353, gnl|galGal2|chr28 (2776818-2776935)
               

               
               218-353, gnl|hg17|chr19 (962348-962477)
               

               
               218-353, gnl|Hg17|chr19 (962499-962364)
               

               
               218-353, gnl|mm7|chr10 (79758186-79758315)
               

               
               218-353, gnl|Mm7|chr10 (79758337-79758202)
               

               
               218-353, gnl|monDom2|scaffold_75 (7279377-7279248)
               

               
               218-353, gnl|rn3|chr7 (11243013-11242884)
               

               
               218-353, gnl|tetNig1|chrUn_random (107306493-107306609)
               

               
               218-353, gnl|xenTro1|scaffold_342 (803583-803468)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               218-353, gnl|bosTau2|chr7 (10284215-10284080)
               

               
               218-353, gnl|canFam2|chr20 (60842543-60842425)
               

               
               218-353, gnl|danRer3|chrUn (59930079-59930196)
               

               
               218-353, gnl|fr1|chrUn (240112428-240112556)
               

               
               218-353, gnl|galGal2|chr28 (2776818-2776935)
               

               
               218-353, gnl|hg17|chr19 (962348-962477)
               

               
               218-353, gnl|Hg17|chr19 (962499-962364)
               

               
               218-353, gnl|mm7|chr10 (79758186-79758315)
               

               
               218-353, gnl|Mm7|chr10 (79758337-79758202)
               

               
               218-353, gnl|monDom2|scaffold_75 (7279377-7279248)
               

               
               218-353, gnl|rn3|chr7 (11243013-11242884)
               

               
               218-353, gnl|tetNig1|chrUn_random (107306493-107306609)
               

               
               218-353, gnl|xenTro1|scaffold_342 (803583-803468)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ill (0.175593)
               

               
               jca (0.11396)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)
               

               
               jca (0.11396)

	218-353, gnl\|bosTau2\|chr7 (10284215-10284080)
	218-353, gnl\|canFam2\|chr20 (60842543-60842425)
	218-353, gnl\|danRer3\|chrUn (59930079-59930196)
	218-353, gnl\|fr1\|chrUn (240112428-240112556)
	218-353, gnl\|galGal2\|chr28 (2776818-2776935)
	218-353, gnl\|hg17\|chr19 (962348-962477)
	218-353, gnl\|Hg17\|chr19 (962499-962364)
	218-353, gnl\|mm7\|chr10 (79758186-79758315)
	218-353, gnl\|Mm7\|chr10 (79758337-79758202)
	218-353, gnl\|monDom2\|scaffold_75 (7279377-7279248)
	218-353, gnl\|rn3\|chr7 (11243013-11242884)
	218-353, gnl\|tetNig1\|chrUn_random (107306493-107306609)
	218-353, gnl\|xenTro1\|scaffold_342 (803583-803468)