Non-Coding RNA Search

Ss1.1-rjca01c_o17.5

Sequence:


               
               TAGTCATTGGAGTCTGGGAGAGCCTCCGCCCTTCTGGCCATGTGACCCTGGGCACACTGC
CTGCCCTCCTTCCACCCCGTGCTCTCCCCTGCAACGTGGAAATGATGTGGAGCAGTGACG
TGTAGGAGCCTGGCTGCAGCTGGCACCTGATAAACGTCAGCGGTGAAGGGTGACCATGCT
GGCCAAGGAAGGGCTGAGCAGAGGCCGAGAGAAACAGCTCAGCCTGGAGCCACCAGGGCA
GGAGTGGGGACAGGGCAGGAGAGGCCTCGGGCTGCCCAGGTCTGAGTTCTGACCCCAGGC
CCCCTGCATCCACAGTTCTTCCCCAACGGAGAGGCCATCTGCACGGGCTCGGACGACGCC
TCCTGCCGCCTGTTTGACCTGCGGGCAGACCAGGAGCTGACCACCTACTCCCACGAGAGC
ATCATCTGCGGCATCACATCTGTGGCCTTCTCCCTCAGCGGCCGCCTGCTCTTCGCTGGC
TACGACGACTTCAACTGCAACGTCTGGGACTCCATGAAGTGCGAGCGTGTGGGCACCCTC
TCTGGCCACGACAACAGGGTCAGCTGCCTGGGGGTCACAGCTGATGGGATGGCTGTGGCC
ACTGGTTCCTGGGACAGCTTCCTCAAAATCTGGAACTGAGGAGGCTGGAGGAGGGGTGAA
GAAAAAGACACGAAGACACTCAGCTGCCCCCTCCCCTGCCCAATTTCTTGAAGGCTTCTT
AAGATTTTCTCTTCTACACCCCAGCTGCCATTCCTGCCCATCTTTCCCCTTGGAGGGCTG
TGGGGAGTATGGGGAGTGTGCCTTCGGGAGGCAGCATCAGGGACAAGGGCAGGGAACTGC
CCCATCTCCTCCCATGGCCTCCCCTCTCCATGGTCCTGACAGCTTCTCCCTTAAGGAGCA
GAGACAACAGACCCCCGCCCCGCCTCGGCAGGCCCACAGGACTTCCTGTCTGAGGCCCCA
GGCCCAGGATTCCACCCCTAGGGCCACCACCTTGATCTAGACCTGGGTGGCACGGGGTGC
CTGGCCCTGTGACTATGGTTCTGGCACCACGAGGGCCTGGTCACCCTCTCCTTCATGCTT
TCTTCTTTGTCCACCTTCTTATTTCTCTTCAAGCACCTGCAATAAAGTGTAGCGCCTGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGTCATTGGAGTCTGGGAGAGCCTCCGCCCTTCTGGCCATGTGACCCTGGGCACACTGC
CTGCCCTCCTTCCACCCCGTGCTCTCCCCTGCAACGTGGAAATGATGTGGAGCAGTGACG
TGTAGGAGCCTGGCTGCAGCTGGCACCTGATAAACGTCAGCGGTGAAGGGTGACCATGCT
GGCCAAGGAAGGGCTGAGCAGAGGCCGAGAGAAACAGCTCAGCCTGGAGCCACCAGGGCA
GGAGTGGGGACAGGGCAGGAGAGGCCTCGGGCTGCCCAGGTCTGAGTTCTGACCCCAGGC
CCCCTGCATCCACAGTTCTTCCCCAACGGAGAGGCCATCTGCACGGGCTCGGACGACGCC
TCCTGCCGCCTGTTTGACCTGCGGGCAGACCAGGAGCTGACCACCTACTCCCACGAGAGC
ATCATCTGCGGCATCACATCTGTGGCCTTCTCCCTCAGCGGCCGCCTGCTCTTCGCTGGC
TACGACGACTTCAACTGCAACGTCTGGGACTCCATGAAGTGCGAGCGTGTGGGCACCCTC
TCTGGCCACGACAACAGGGTCAGCTGCCTGGGGGTCACAGCTGATGGGATGGCTGTGGCC
ACTGGTTCCTGGGACAGCTTCCTCAAAATCTGGAACTGAGGAGGCTGGAGGAGGGGTGAA
GAAAAAGACACGAAGACACTCAGCTGCCCCCTCCCCTGCCCAATTTCTTGAAGGCTTCTT
AAGATTTTCTCTTCTACACCCCAGCTGCCATTCCTGCCCATCTTTCCCCTTGGAGGGCTG
TGGGGAGTATGGGGAGTGTGCCTTCGGGAGGCAGCATCAGGGACAAGGGCAGGGAACTGC
CCCATCTCCTCCCATGGCCTCCCCTCTCCATGGTCCTGACAGCTTCTCCCTTAAGGAGCA
GAGACAACAGACCCCCGCCCCGCCTCGGCAGGCCCACAGGACTTCCTGTCTGAGGCCCCA
GGCCCAGGATTCCACCCCTAGGGCCACCACCTTGATCTAGACCTGGGTGGCACGGGGTGC
CTGGCCCTGTGACTATGGTTCTGGCACCACGAGGGCCTGGTCACCCTCTCCTTCATGCTT
TCTTCTTTGTCCACCTTCTTATTTCTCTTCAAGCACCTGCAATAAAGTGTAGCGCCTGGA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               312-524, gnl|bosTau2|chr16 (37615846-37616058)
               

               
               312-524, gnl|Hg17|chr1 (1752874-1752662)
               

               
               312-524, gnl|Mm7|chr4 (154544553-154544765)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               312-524, gnl|bosTau2|chr16 (37615846-37616058)
               

               
               312-524, gnl|Hg17|chr1 (1752874-1752662)
               

               
               312-524, gnl|Mm7|chr4 (154544553-154544765)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               ecc (0.115035)
               

               
               jca (0.11396)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.115035)
               

               
               jca (0.11396)

	312-524, gnl\|bosTau2\|chr16 (37615846-37616058)
	312-524, gnl\|Hg17\|chr1 (1752874-1752662)
	312-524, gnl\|Mm7\|chr4 (154544553-154544765)