Non-Coding RNA Search

Ss1.1-rjca02c_f2.5

Sequence:


               
               AACGCGGCTGATGCAGTGGAGATACATGTTCGACATTGCGGTGAAGTGGAGACGGATCGC
TGACCCAGACCAGCCAGTGCTATGGTTGGATCAAATGCCGGCACGAAGTCTTAGCAGAGG
ATTTAACAACCACATCAATTTAATCAGGGGTCAGGTGATTAACATGAGATACCTGGAATA
TTTTGAGAAAATTCTCCATTTTATTAAAGATAGAATTCTGGTTTATCATGGAGCTAATAA
TCCTAAGGGATTGTTGGAAGTTAGAGAAGCTCTGGAAAAGGTCCACAAAGTAGAAGACCT
CCTTCCAATTATGAAGCAGTTTAATACTAAAACAAAGGATGGGTTCACTGTGAACACAAA
AGTTCCCAGCCTCAAAGACCAGGGGAAGGAATACGATGGCTTCACGATCACTATTACAGG
AGACAAGGTTGGCAATATACTATTTTCTGTGGAGACTCAAACCACAGAAGAAAGGACGCA
ATTATATCACGCCGAAATAGATGCACTTTATAAAGATCTAACGGCCAAAGGAAAAGTACT
AATTCTCTCATCAGAATTTGGGGAGGCTGATGCTGTTTGCAACTTAATCTTATCCTTAGT
TTATTACTTTTATAATTTGATGCCACTCTCTCGTGGATCCAGTGTAATCGCTTACTCAGT
GATCGTGGGAGCTCTGATGGCAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACGCGGCTGATGCAGTGGAGATACATGTTCGACATTGCGGTGAAGTGGAGACGGATCGC
TGACCCAGACCAGCCAGTGCTATGGTTGGATCAAATGCCGGCACGAAGTCTTAGCAGAGG
ATTTAACAACCACATCAATTTAATCAGGGGTCAGGTGATTAACATGAGATACCTGGAATA
TTTTGAGAAAATTCTCCATTTTATTAAAGATAGAATTCTGGTTTATCATGGAGCTAATAA
TCCTAAGGGATTGTTGGAAGTTAGAGAAGCTCTGGAAAAGGTCCACAAAGTAGAAGACCT
CCTTCCAATTATGAAGCAGTTTAATACTAAAACAAAGGATGGGTTCACTGTGAACACAAA
AGTTCCCAGCCTCAAAGACCAGGGGAAGGAATACGATGGCTTCACGATCACTATTACAGG
AGACAAGGTTGGCAATATACTATTTTCTGTGGAGACTCAAACCACAGAAGAAAGGACGCA
ATTATATCACGCCGAAATAGATGCACTTTATAAAGATCTAACGGCCAAAGGAAAAGTACT
AATTCTCTCATCAGAATTTGGGGAGGCTGATGCTGTTTGCAACTTAATCTTATCCTTAGT
TTATTACTTTTATAATTTGATGCCACTCTCTCGTGGATCCAGTGTAATCGCTTACTCAGT
GATCGTGGGAGCTCTGATGGCAAG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|10439026|dbj|BAB15407.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|10439026|dbj|BAB15407.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               427-546, + strand, RNAz p=0.758835

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               427-546, + strand, RNAz p=0.758835

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               427-595, gnl|bosTau2|chr28 (1370120-1369956)
               

               
               427-595, gnl|Hg17|chr1 (227355239-227355075)
               

               
               427-595, gnl|Mm7|chr8 (123262504-123262345)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               427-595, gnl|bosTau2|chr28 (1370120-1369956)
               

               
               427-595, gnl|Hg17|chr1 (227355239-227355075)
               

               
               427-595, gnl|Mm7|chr8 (123262504-123262345)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

Help | Less info


               
               cmu (0.186393)
               

               
               csp (0.161186)
               

               
               nca (0.136874)
               

               
               eep (0.122564)
               

               
               jca (0.11396)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.186393)
               

               
               csp (0.161186)
               

               
               nca (0.136874)
               

               
               eep (0.122564)
               

               
               jca (0.11396)

	427-595, gnl\|bosTau2\|chr28 (1370120-1369956)
	427-595, gnl\|Hg17\|chr1 (227355239-227355075)
	427-595, gnl\|Mm7\|chr8 (123262504-123262345)

	cmu (0.186393)
	csp (0.161186)
	nca (0.136874)
	eep (0.122564)
	jca (0.11396)