Non-Coding RNA Search

Ss1.1-rjca02c_i23.5

Sequence:


               
               GGGAAGAAGGCAAGGTGCTCATCTTCGACGACTCCTTTGAGCACGAGGTGTGGCAGGACG
CCAAGTCTTTCCGGCTGATTTTCATCGTGGATGTGTGGCACCCGGAGCTGACACCCCAGC
AGAGACTCAGCCTTCCTGCAATTTAGTCGTGCCGTCTCGGACACGCTGGAGAGGTTCTGA
CTCCTTGATGTGGACATAGACCTTCAAACACCATAGCCCTTAATTCCCTTGACTTGCAGC
CTGAAAAATTTCTAAACCTCCTCTGGGATCGGAAGATGCTAAAGGGAATATTCGCCTTGC
TGTAGTTCTTTTAGAAAAGACCTGCCGGTTTTCACCCAGGACAGCCCTAATCTGATGCCC
GTATTCCAGGTGAACACATGATGCTTCTACCTTGCCAGCCAAAGATATGTTTTTCCACTG
AAAGTAGGCAAAATCAACATAAATGAGAATATGTGTAGAGATGGTGAATAATGGCTTTAG
TTGGCCATTTTTCTCTACAGTTATATTTTTCGAGGGTCGCTAGACCATTTGGTCATCACA
TACCACGACTGTTTTGGTTCATTTTAGTGACAGGCTGTATAAATGCTTGACTTCTAGCTG
TAGCTTCCCTGGTGAACTCAGATTTCCATCTTTTAGTTATTTTTAGTAAAAGGCACTCAT
TTGAAAAAAGAAAATTCTACTTTCCTAATACAAAGGAGAAGGAAGTAATCACGCCAGTGT
CTATGAACTGGACTGCTCCCTACCCATGGGGTCGATTTACTCTTTGGTCTTCATTGAGAG
CCGGTGTCTTAATTTCTCTCCTCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGAAGAAGGCAAGGTGCTCATCTTCGACGACTCCTTTGAGCACGAGGTGTGGCAGGACG
CCAAGTCTTTCCGGCTGATTTTCATCGTGGATGTGTGGCACCCGGAGCTGACACCCCAGC
AGAGACTCAGCCTTCCTGCAATTTAGTCGTGCCGTCTCGGACACGCTGGAGAGGTTCTGA
CTCCTTGATGTGGACATAGACCTTCAAACACCATAGCCCTTAATTCCCTTGACTTGCAGC
CTGAAAAATTTCTAAACCTCCTCTGGGATCGGAAGATGCTAAAGGGAATATTCGCCTTGC
TGTAGTTCTTTTAGAAAAGACCTGCCGGTTTTCACCCAGGACAGCCCTAATCTGATGCCC
GTATTCCAGGTGAACACATGATGCTTCTACCTTGCCAGCCAAAGATATGTTTTTCCACTG
AAAGTAGGCAAAATCAACATAAATGAGAATATGTGTAGAGATGGTGAATAATGGCTTTAG
TTGGCCATTTTTCTCTACAGTTATATTTTTCGAGGGTCGCTAGACCATTTGGTCATCACA
TACCACGACTGTTTTGGTTCATTTTAGTGACAGGCTGTATAAATGCTTGACTTCTAGCTG
TAGCTTCCCTGGTGAACTCAGATTTCCATCTTTTAGTTATTTTTAGTAAAAGGCACTCAT
TTGAAAAAAGAAAATTCTACTTTCCTAATACAAAGGAGAAGGAAGTAATCACGCCAGTGT
CTATGAACTGGACTGCTCCCTACCCATGGGGTCGATTTACTCTTTGGTCTTCATTGAGAG
CCGGTGTCTTAATTTCTCTCCTCG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-152, - strand, RNAz p=0.561088

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-152, - strand, RNAz p=0.561088

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               41-183, - strand, RNAmicro p=0.991069

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               41-183, - strand, RNAmicro p=0.991069

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-803, gnl|bosTau2|chr14 (16017809-16018625)
               

               
               1-803, gnl|Hg17|chr8 (62578617-62577801)
               

               
               1-803, gnl|Mm7|chr4 (9380587-9379774)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-803, gnl|bosTau2|chr14 (16017809-16018625)
               

               
               1-803, gnl|Hg17|chr8 (62578617-62577801)
               

               
               1-803, gnl|Mm7|chr4 (9380587-9379774)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ova (0.129132)
               

               
               jca (0.11396)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ova (0.129132)
               

               
               jca (0.11396)

	1-803, gnl\|bosTau2\|chr14 (16017809-16018625)
	1-803, gnl\|Hg17\|chr8 (62578617-62577801)
	1-803, gnl\|Mm7\|chr4 (9380587-9379774)