Ss1.1-rjca02c_j16.5
|
TCTTGGAGAGCCCGGGAAGCAGGGATCTCGGGGAGACCCCGGCGATGCTGGTCCCCGCGG
AGACTCAGGACAGCCTGGCCCCAAGGGAGACCCCGGCAGGCCTGGATTCAGCTACCCGGG
CCCCCGAGGAGCACCCGGAGAGAAAGGCGAGCCTGGCCCCCCTGGCCCCGAGGGGGGCAG
AGGTGACTTTGGCTCCAAAGGAAGACCGGGGACAAAAGGCCAGAAGGGCGAGCCTGCGGA
TCCTGGTCCCCCTGGTGAGCCAGGCCCCCGGGGGCAGAGAGGAGCCCCAGGACCAGAGGG
AGAGCCTGGCCCCCCAGGAGACCCCGGCCTCACGGAGTGCGACGTCATGACCTACGTGAG
GGAGACCTGTGGATGCTGTGACTGTGAGAAGCGCTGCGGCGCCCTGGATGTGGTGTTCGT
CATCGACAGCTCTGAGAGCATCGGCTACACCAACTTCACCCTCGAGAAGAACTTCGTCAT
CAACGTGGTCAACAGGCTGGGGGCCATCGCCAAGGACCCCAAGTCGGAGACGGGGACCCG
CGTGGGTGTCGTGCAGTACAGCCACGAGGGCACCTTCGAAGCCATCCAGCTGGACGACGA
GCGCATCGACTCGCTGTCCAGCTTCAAGGAGGCCGTCAAGAACCTCGAGTGGATCGCCGG
CGGCACCTGGACGCCCTCGGCGCTCAAGTTCGCCTACAACAAGCTCATCAAGGAGAGCCG
GCGCCAGAAGACGCGCGTGTTCGCCGTGGTCATCACCGACGGCCGCCACGACCCCCGGGA
CGATGACCTCAACCTGCGCGCGCTGTGCAACCACGACGTCACGGTGACGGCCATCGGCAT
CGGGGACATGTTCCACGAGAAGCACGAGAGCGAGAACCTGTACTCCATCGCCTGCGACAA
GCCGCAGCAGGTGCGAAACATGACGCTCTTCTCCGACCTGGTGGCGGAGAAGTTCATCGA
CGACATGGAGGACGTCCTGTGCCCAGACCCCCAGATCGTGTGCCCCGACCTTCCCTGCCA
AACAGAGTTGTACGTGGCCCAGTGCACGCAGCGGCCCGTGGACATCGTCTTCCTGCTGGA
CGGCTCCGAGCGGCTGGGCGAGCAGAACTTCCACAAGGCGCAGCGCTTCGTGGAGGACGT
GTCCCGGAGGCTGACGCTGGCGCGCAGGGACGACGACCCGCTCAACGCGCGCGTGGCGCT
GCTGCAGTTCGGGGGCCCGCGCGAGCAGCAGGTGGCCTTCCCGCTGACCTTCAACCTGAC
GGTCATCCAGGAGGCGCTGGCGAGCTCGCGCTACCTCAACTCCTTCTCGCACGTGGGCAC
GGGCATCGTGCACGCCATCAACCAGGTGGTGCTCGGCGCCCCGGCCGGGGCGCGCCGCCA
CGCCGAGCTGGCCTTCGTGTTCCTCACGGACGGCATCACGGGCAACGAGAGTCTGGAGGA
GGCGGTGCACTCCATGCGCAAGCAGAACGTGGTGCCCACCGTGGTGGCTGTGGGCAGCGA
CGTGGACGCGGATGTGCTGTCCAAGATCAGCCTGGGCGATGAGGCCGCCGTCTTCCGCGA
GAAGGACTACGACAGCCTGGTCCAGCCCGGCTTCTTTGACAGGTTCATCCGCTGGATCTG |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TCTTGGAGAGCCCGGGAAGCAGGGATCTCGGGGAGACCCCGGCGATGCTGGTCCCCGCGG
AGACTCAGGACAGCCTGGCCCCAAGGGAGACCCCGGCAGGCCTGGATTCAGCTACCCGGG
CCCCCGAGGAGCACCCGGAGAGAAAGGCGAGCCTGGCCCCCCTGGCCCCGAGGGGGGCAG
AGGTGACTTTGGCTCCAAAGGAAGACCGGGGACAAAAGGCCAGAAGGGCGAGCCTGCGGA
TCCTGGTCCCCCTGGTGAGCCAGGCCCCCGGGGGCAGAGAGGAGCCCCAGGACCAGAGGG
AGAGCCTGGCCCCCCAGGAGACCCCGGCCTCACGGAGTGCGACGTCATGACCTACGTGAG
GGAGACCTGTGGATGCTGTGACTGTGAGAAGCGCTGCGGCGCCCTGGATGTGGTGTTCGT
CATCGACAGCTCTGAGAGCATCGGCTACACCAACTTCACCCTCGAGAAGAACTTCGTCAT
CAACGTGGTCAACAGGCTGGGGGCCATCGCCAAGGACCCCAAGTCGGAGACGGGGACCCG
CGTGGGTGTCGTGCAGTACAGCCACGAGGGCACCTTCGAAGCCATCCAGCTGGACGACGA
GCGCATCGACTCGCTGTCCAGCTTCAAGGAGGCCGTCAAGAACCTCGAGTGGATCGCCGG
CGGCACCTGGACGCCCTCGGCGCTCAAGTTCGCCTACAACAAGCTCATCAAGGAGAGCCG
GCGCCAGAAGACGCGCGTGTTCGCCGTGGTCATCACCGACGGCCGCCACGACCCCCGGGA
CGATGACCTCAACCTGCGCGCGCTGTGCAACCACGACGTCACGGTGACGGCCATCGGCAT
CGGGGACATGTTCCACGAGAAGCACGAGAGCGAGAACCTGTACTCCATCGCCTGCGACAA
GCCGCAGCAGGTGCGAAACATGACGCTCTTCTCCGACCTGGTGGCGGAGAAGTTCATCGA
CGACATGGAGGACGTCCTGTGCCCAGACCCCCAGATCGTGTGCCCCGACCTTCCCTGCCA
AACAGAGTTGTACGTGGCCCAGTGCACGCAGCGGCCCGTGGACATCGTCTTCCTGCTGGA
CGGCTCCGAGCGGCTGGGCGAGCAGAACTTCCACAAGGCGCAGCGCTTCGTGGAGGACGT
GTCCCGGAGGCTGACGCTGGCGCGCAGGGACGACGACCCGCTCAACGCGCGCGTGGCGCT
GCTGCAGTTCGGGGGCCCGCGCGAGCAGCAGGTGGCCTTCCCGCTGACCTTCAACCTGAC
GGTCATCCAGGAGGCGCTGGCGAGCTCGCGCTACCTCAACTCCTTCTCGCACGTGGGCAC
GGGCATCGTGCACGCCATCAACCAGGTGGTGCTCGGCGCCCCGGCCGGGGCGCGCCGCCA
CGCCGAGCTGGCCTTCGTGTTCCTCACGGACGGCATCACGGGCAACGAGAGTCTGGAGGA
GGCGGTGCACTCCATGCGCAAGCAGAACGTGGTGCCCACCGTGGTGGCTGTGGGCAGCGA
CGTGGACGCGGATGTGCTGTCCAAGATCAGCCTGGGCGATGAGGCCGCCGTCTTCCGCGA
GAAGGACTACGACAGCCTGGTCCAGCCCGGCTTCTTTGACAGGTTCATCCGCTGGATCTG |
|
gi|61854531|ref|XP_610964.1| |
Protein identifier
|
gi|61854531|ref|XP_610964.1| |
|
533-984, gnl|bosTau2|chr1 (65848996-65848545) |
|
533-984, gnl|canFam2|chrUn (64860750-64860281) |
|
533-984, gnl|danRer3|chr11 (36527562-36527096) |
|
533-984, gnl|fr1|chrUn (68140544-68139881) |
|
533-984, gnl|galGal2|chr7 (6661538-6662019) |
|
533-984, gnl|hg17|chr21 (46370121-46370588) |
|
533-984, gnl|Hg17|chr21 (46370126-46370577) |
|
533-984, gnl|loxAfr1|scaffold_106829 (8774-8302) |
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533-984, gnl|mm7|chr10 (76259573-76259107) |
|
533-984, gnl|Mm7|chr10 (76259566-76259115) |
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533-984, gnl|monDom2|scaffold_190 (1194792-1194319) |
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533-984, gnl|oryCun1|scaffold_147233 (489-25) |
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533-984, gnl|panTro1|chr22 (46766666-46767133) |
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533-984, gnl|rheMac2|chr3 (656384-655917) |
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533-984, gnl|rn3|chr20 (12456738-12457204) |
|
533-984, gnl|tetNig1|chr15 (2372662-2373291) |
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533-984, gnl|xenTro1|scaffold_855 (294346-294810) |
| |
|
1024-1620, gnl|bosTau2|chr1 (65842703-65842107) |
|
1024-1620, gnl|Hg17|chr21 (46376294-46376890) |
|
1024-1620, gnl|Mm7|chr10 (76252464-76251868) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
533-984, gnl|bosTau2|chr1 (65848996-65848545) |
|
533-984, gnl|canFam2|chrUn (64860750-64860281) |
|
533-984, gnl|danRer3|chr11 (36527562-36527096) |
|
533-984, gnl|fr1|chrUn (68140544-68139881) |
|
533-984, gnl|galGal2|chr7 (6661538-6662019) |
|
533-984, gnl|hg17|chr21 (46370121-46370588) |
|
533-984, gnl|Hg17|chr21 (46370126-46370577) |
|
533-984, gnl|loxAfr1|scaffold_106829 (8774-8302) |
|
533-984, gnl|mm7|chr10 (76259573-76259107) |
|
533-984, gnl|Mm7|chr10 (76259566-76259115) |
|
533-984, gnl|monDom2|scaffold_190 (1194792-1194319) |
|
533-984, gnl|oryCun1|scaffold_147233 (489-25) |
|
533-984, gnl|panTro1|chr22 (46766666-46767133) |
|
533-984, gnl|rheMac2|chr3 (656384-655917) |
|
533-984, gnl|rn3|chr20 (12456738-12457204) |
|
533-984, gnl|tetNig1|chr15 (2372662-2373291) |
|
533-984, gnl|xenTro1|scaffold_855 (294346-294810) |
| |
|
1024-1620, gnl|bosTau2|chr1 (65842703-65842107) |
|
1024-1620, gnl|Hg17|chr21 (46376294-46376890) |
|
1024-1620, gnl|Mm7|chr10 (76252464-76251868) |
|
jca (1.59544) |
|
nep (0.919625) |
|
eep (0.490256) |
|
eru (0.480192) |
|
nca (0.273748) |
|
nco (0.161734) |
|
pla (0.133672) |
|
nmm (0.132802) |
|
ute (0.132784) |
|
ese (0.126502) |
|
clu (0.119646) |
|
jej (0.0989218) |
|
jca (1.59544) |
|
nep (0.919625) |
|
eep (0.490256) |
|
eru (0.480192) |
|
nca (0.273748) |
|
nco (0.161734) |
|
pla (0.133672) |
|
nmm (0.132802) |
|
ute (0.132784) |
|
ese (0.126502) |
|
clu (0.119646) |
|
jej (0.0989218) |
