Non-Coding RNA Search

Ss1.1-rjca02c_k24.5

Sequence:


               
               GAAGCTGCGGCTGCGGGTGGAGGAGCTGAAGAAAGAGCTGGCCCAGGCTGAGGATGAGGT
GAGCACCTGCTGGGGCTCCAGGCAGCCTGCAGGCCTCAGCTCAGGTAGATAGGATGGGGC
TGCAGAGCCCTCCCATGCTGCTCCGTGCTGGGTCCCCAGCACTTGGCACTCAGGGTAGAG
CAGGTGGATGGGTGACAAATGGTGTGCGGCTGGAGGAGGTGGGCCTTGATCCCGGACTCA
AAGGAGAGACAGGAATTGCTCTTGGAGAAGGACATTCCCACAAAGGAGTGGCAGGAGTGG
CTGGTCCTAAGTGGATGGTAGGTTGGGCCGGCCCAACCCAAGATGCTCTTGGCCCTGCTC
TCCCCGCAGTTGGATGAGGCCCACAACCAGGCACGGAAGCTGCAGCGGTCGCTGGACGAG
CAGACGGAGCAGAGCGAGAACCTGCAGGTGCAGCTGGAGCATGTGCAGTCCAGGTGGGCC
CCAGCTGCAGCCCTGCGGAAGAGGCCTCCCAGCCCTGCCGCAGAAACAGGGCAGAGATGC
GAGGCGGGGGACGGAGCCAGCGACCTGAACGAGGATGAAGACCTGCAGATCCAGGTGGCC
TAGACTCCCGGGGCTGGGCAGGACCGGCCCGGTGCCCAGGCCCCCAAGTGCCCAGGCGGA
CCGGCCACTGGAACTGATGCAGCTGCCTGTGCTCACTCTGGGAGCAGAGCCCGGTCTGCC
ATGGACGCCTCCCTTCTCCACCACGGTGGGCCTCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGCTGCGGCTGCGGGTGGAGGAGCTGAAGAAAGAGCTGGCCCAGGCTGAGGATGAGGT
GAGCACCTGCTGGGGCTCCAGGCAGCCTGCAGGCCTCAGCTCAGGTAGATAGGATGGGGC
TGCAGAGCCCTCCCATGCTGCTCCGTGCTGGGTCCCCAGCACTTGGCACTCAGGGTAGAG
CAGGTGGATGGGTGACAAATGGTGTGCGGCTGGAGGAGGTGGGCCTTGATCCCGGACTCA
AAGGAGAGACAGGAATTGCTCTTGGAGAAGGACATTCCCACAAAGGAGTGGCAGGAGTGG
CTGGTCCTAAGTGGATGGTAGGTTGGGCCGGCCCAACCCAAGATGCTCTTGGCCCTGCTC
TCCCCGCAGTTGGATGAGGCCCACAACCAGGCACGGAAGCTGCAGCGGTCGCTGGACGAG
CAGACGGAGCAGAGCGAGAACCTGCAGGTGCAGCTGGAGCATGTGCAGTCCAGGTGGGCC
CCAGCTGCAGCCCTGCGGAAGAGGCCTCCCAGCCCTGCCGCAGAAACAGGGCAGAGATGC
GAGGCGGGGGACGGAGCCAGCGACCTGAACGAGGATGAAGACCTGCAGATCCAGGTGGCC
TAGACTCCCGGGGCTGGGCAGGACCGGCCCGGTGCCCAGGCCCCCAAGTGCCCAGGCGGA
CCGGCCACTGGAACTGATGCAGCTGCCTGTGCTCACTCTGGGAGCAGAGCCCGGTCTGCC
ATGGACGCCTCCCTTCTCCACCACGGTGGGCCTCTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               541-695, - strand, RNAz p=0.95222

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               541-695, - strand, RNAz p=0.95222

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               197-530, gnl|bosTau2|chr18 (21435178-21435522)
               

               
               197-530, gnl|Hg17|chr16 (56107027-56106725)
               


               
               541-751, gnl|bosTau2|chr18 (21437927-21438140)
               

               
               541-751, gnl|Hg17|chr16 (56104216-56104012)
               

               
               541-751, gnl|Mm7|chr8 (93492368-93492163)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               197-530, gnl|bosTau2|chr18 (21435178-21435522)
               

               
               197-530, gnl|Hg17|chr16 (56107027-56106725)
               


               
               541-751, gnl|bosTau2|chr18 (21437927-21438140)
               

               
               541-751, gnl|Hg17|chr16 (56104216-56104012)
               

               
               541-751, gnl|Mm7|chr8 (93492368-93492163)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               jca (0.11396)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.11396)

	197-530, gnl\|bosTau2\|chr18 (21435178-21435522)
	197-530, gnl\|Hg17\|chr16 (56107027-56106725)

	541-751, gnl\|bosTau2\|chr18 (21437927-21438140)
	541-751, gnl\|Hg17\|chr16 (56104216-56104012)
	541-751, gnl\|Mm7\|chr8 (93492368-93492163)