Non-Coding RNA Search

Ss1.1-rjca03c_a7.5

Sequence:


               
               ATTTTATTTAAGTATGAATACTAGTTGTTCAGTGCCAGAAGAACCATGACTTGCAAAAAG
GCTTTGCACTCAAAATATTTTTATTTTGTTTGTAACTGTTAATAATTTCTGCTTTCTTTT
GACTACTTGACTTACAAAATGATCTGACTACTGCATTGAGAAACAGGTAACTTGTTTATA
AGTAATTGCTTGTTTTATGTGGTTGTAATACTTTTCCACTATTTTTGAAAAATAAAAGTC
ATGGGTAGCATTCATTGAAAGATAGTAAAAAATATAATTTACTACATATATTGATTCTTT
AAATGTTGCCTTAAACAGGTATAAACGAGCAGTAGGAATTGCTGTGTACTTATTTACCTC
AAGGTGCAAAAGAATTAAACCTGTACCTATTCCATTGATAAAATAAATTCACATGAACAG
CCCTGCACTTTCTCAGATGCCTTGGTTTCCAGGATGGAGCTTAGTGCTACTGAGTACCCT
GGCGGCAGAGCCACCTCAGGATCGTCTTTATTTATAGATGTCTGTTTACAAAGACTATCA
TACATCCTCATGTTGACCATCTGAAATTTGCTTCCTTTTGAATGCTATTTCACTCTAAAA
TTGCAGCTTTTGAGAAAACAATGAACGAAAAACTTCCTTATGGTAAAAAGATGCTTTATA
TTCTCTAATGATACTAGACGTGCAAAGTGAGGCACACGATTTTTCTAACGGGTGTGTGTA
TCCATGAGTGTGTTCGTGTGAATGATGTTGTCAAGCGTCAGTCTCTCAAGGTGTTTAAAA
AAACTGGCATATCATTGTTCGTATTTGCCAAGTCTGTAAAATGTATAAGACAAAATTTTT
CATGTGCTAATACATGTATTTATAAAGCAGGTTTCTTTACGACTCAAAATTACTATTTTG
TTTTCTCCATCCAAAAAATATTTGTTTCTTCCACATAAAGAAGAAAGTGTATGTGTATGT
GTGTGTGTGTGTATATATATATATATATGTATATATATATATATATAAAATAGCTTATAG
CTTTTTTCTTTCACGAAGGCAGGTTCATAATTCTGTAAAAAGAAAAATAGTTTCTGAGTC
AGACATGACACCAGAGCTTGCTGTTTTTATAGGATTGTATCATGTACATCAGGTCTGTAA
ATGTGCTCAGCAGTGTAACATGTGAATCCTTTTTAAAGTGCTCAGATTTTGGATGTGTAA
GCCATTGATATAACATTGTAATTAATTCAAAATGTTTAAATTAAATAATTTAATGTTTTA
AATTTATTTATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTTATTTAAGTATGAATACTAGTTGTTCAGTGCCAGAAGAACCATGACTTGCAAAAAG
GCTTTGCACTCAAAATATTTTTATTTTGTTTGTAACTGTTAATAATTTCTGCTTTCTTTT
GACTACTTGACTTACAAAATGATCTGACTACTGCATTGAGAAACAGGTAACTTGTTTATA
AGTAATTGCTTGTTTTATGTGGTTGTAATACTTTTCCACTATTTTTGAAAAATAAAAGTC
ATGGGTAGCATTCATTGAAAGATAGTAAAAAATATAATTTACTACATATATTGATTCTTT
AAATGTTGCCTTAAACAGGTATAAACGAGCAGTAGGAATTGCTGTGTACTTATTTACCTC
AAGGTGCAAAAGAATTAAACCTGTACCTATTCCATTGATAAAATAAATTCACATGAACAG
CCCTGCACTTTCTCAGATGCCTTGGTTTCCAGGATGGAGCTTAGTGCTACTGAGTACCCT
GGCGGCAGAGCCACCTCAGGATCGTCTTTATTTATAGATGTCTGTTTACAAAGACTATCA
TACATCCTCATGTTGACCATCTGAAATTTGCTTCCTTTTGAATGCTATTTCACTCTAAAA
TTGCAGCTTTTGAGAAAACAATGAACGAAAAACTTCCTTATGGTAAAAAGATGCTTTATA
TTCTCTAATGATACTAGACGTGCAAAGTGAGGCACACGATTTTTCTAACGGGTGTGTGTA
TCCATGAGTGTGTTCGTGTGAATGATGTTGTCAAGCGTCAGTCTCTCAAGGTGTTTAAAA
AAACTGGCATATCATTGTTCGTATTTGCCAAGTCTGTAAAATGTATAAGACAAAATTTTT
CATGTGCTAATACATGTATTTATAAAGCAGGTTTCTTTACGACTCAAAATTACTATTTTG
TTTTCTCCATCCAAAAAATATTTGTTTCTTCCACATAAAGAAGAAAGTGTATGTGTATGT
GTGTGTGTGTGTATATATATATATATATGTATATATATATATATATAAAATAGCTTATAG
CTTTTTTCTTTCACGAAGGCAGGTTCATAATTCTGTAAAAAGAAAAATAGTTTCTGAGTC
AGACATGACACCAGAGCTTGCTGTTTTTATAGGATTGTATCATGTACATCAGGTCTGTAA
ATGTGCTCAGCAGTGTAACATGTGAATCCTTTTTAAAGTGCTCAGATTTTGGATGTGTAA
GCCATTGATATAACATTGTAATTAATTCAAAATGTTTAAATTAAATAATTTAATGTTTTA
AATTTATTTATG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q7PKG0_ANOGA

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q7PKG0_ANOGA

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-960, gnl|bosTau2|chr22 (5896097-5897079)
               

               
               1-960, gnl|Hg17|chr3 (27391198-27390229)
               

               
               1-960, gnl|Mm7|chr14 (12610917-12611909)
               


               
               996-1272, gnl|bosTau2|chr22 (5897067-5897345)
               

               
               996-1272, gnl|Hg17|chr3 (27390241-27389965)
               

               
               996-1272, gnl|Mm7|chr14 (12611897-12612128)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-960, gnl|bosTau2|chr22 (5896097-5897079)
               

               
               1-960, gnl|Hg17|chr3 (27391198-27390229)
               

               
               1-960, gnl|Mm7|chr14 (12610917-12611909)
               


               
               996-1272, gnl|bosTau2|chr22 (5897067-5897345)
               

               
               996-1272, gnl|Hg17|chr3 (27390241-27389965)
               

               
               996-1272, gnl|Mm7|chr14 (12611897-12612128)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               mga (0.160205)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mga (0.160205)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)

	1-960, gnl\|bosTau2\|chr22 (5896097-5897079)
	1-960, gnl\|Hg17\|chr3 (27391198-27390229)
	1-960, gnl\|Mm7\|chr14 (12610917-12611909)

	996-1272, gnl\|bosTau2\|chr22 (5897067-5897345)
	996-1272, gnl\|Hg17\|chr3 (27390241-27389965)
	996-1272, gnl\|Mm7\|chr14 (12611897-12612128)