Non-Coding RNA Search

Ss1.1-rjca03c_b21.5

Sequence:


               
               TGTTCCTGTTTGTAACTAGTCCTTTTCGGAAATATCTTCTTCTGTTTTTTGCCCCGGCTG
AGTGTGCTTTGGCTTTTGTCTGAGAATGGGTTTAGGTAGGAGGGTTCCCTGAAGGTCCTA
GTCTTTTGGTGTAATAGTATTGTTGAGTCTTGGCCTGACTGAGGGCCATGTCATATCCAT
GTAAGTGGTATGCAGTCAAAACCCATTTTCAAGGTTTACATTTTGGTTGTGTGGAGAGCT
CTGTTCACCTCAGCCTGCAGGCCGTTTGTGTACAATGTACAGCAAATGTCTTTAAGTGTT
GAGTGGTCCACTGGGGGAAGGCAAATGAAGAGAATGCATTTTGAGCATTCCAAATCAATA
GTTTGAGCAGTGCCTTTTGGGGTCCAGTCTTTTTGGATTGGATTCTATTTCATCTTTTGA
TGTGACCTTCCACTTTTTTTTTTTTTTTTTTTTTAAGGTTGGTGGTCATCAAATCAGAAA
GTTAGCCACAGCACTTCAGTGCCTTTATTGGTAGTTTTCTTTTTTCTTTTCTTTTCTTTC
TTTCTTTCTTTTTTGGGAAAAGTATAACTCTGCAGATGGTATTGTCTAAAAAAAAACTGA
AAGAAGGAAAATGATCAGCTTCATTTGGTAACTGACTTATGTCCACAATGTAAATAGGGT
TGATACTTGTTCATTTCGAATATGTTTTCCTTAGTATGTTCTCTAATACAGGATCATCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTTCCTGTTTGTAACTAGTCCTTTTCGGAAATATCTTCTTCTGTTTTTTGCCCCGGCTG
AGTGTGCTTTGGCTTTTGTCTGAGAATGGGTTTAGGTAGGAGGGTTCCCTGAAGGTCCTA
GTCTTTTGGTGTAATAGTATTGTTGAGTCTTGGCCTGACTGAGGGCCATGTCATATCCAT
GTAAGTGGTATGCAGTCAAAACCCATTTTCAAGGTTTACATTTTGGTTGTGTGGAGAGCT
CTGTTCACCTCAGCCTGCAGGCCGTTTGTGTACAATGTACAGCAAATGTCTTTAAGTGTT
GAGTGGTCCACTGGGGGAAGGCAAATGAAGAGAATGCATTTTGAGCATTCCAAATCAATA
GTTTGAGCAGTGCCTTTTGGGGTCCAGTCTTTTTGGATTGGATTCTATTTCATCTTTTGA
TGTGACCTTCCACTTTTTTTTTTTTTTTTTTTTTAAGGTTGGTGGTCATCAAATCAGAAA
GTTAGCCACAGCACTTCAGTGCCTTTATTGGTAGTTTTCTTTTTTCTTTTCTTTTCTTTC
TTTCTTTCTTTTTTGGGAAAAGTATAACTCTGCAGATGGTATTGTCTAAAAAAAAACTGA
AAGAAGGAAAATGATCAGCTTCATTTGGTAACTGACTTATGTCCACAATGTAAATAGGGT
TGATACTTGTTCATTTCGAATATGTTTTCCTTAGTATGTTCTCTAATACAGGATCATCTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               306-425, - strand, RNAz p=0.923937

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               306-425, - strand, RNAz p=0.923937

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-720, gnl|bosTau2|chr3 (25868312-25867569)
               

               
               1-720, gnl|Hg17|chr1 (109848183-109848904)
               

               
               1-720, gnl|Mm7|chr3 (107926442-107925759)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-720, gnl|bosTau2|chr3 (25868312-25867569)
               

               
               1-720, gnl|Hg17|chr1 (109848183-109848904)
               

               
               1-720, gnl|Mm7|chr3 (107926442-107925759)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fcc (0.197785)
               

               
               fty (0.17584)
               

               
               eye (0.170503)
               

               
               jca (0.11396)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               fty (0.17584)
               

               
               eye (0.170503)
               

               
               jca (0.11396)

	1-720, gnl\|bosTau2\|chr3 (25868312-25867569)
	1-720, gnl\|Hg17\|chr1 (109848183-109848904)
	1-720, gnl\|Mm7\|chr3 (107926442-107925759)