Non-Coding RNA Search

Ss1.1-rjca03c_c10.5

Sequence:


               
               GGGCCCCGGTGCTGGGGAGAAGCCCAGCCCCAGGCCTGATAAAGAGGGGACACATCTGAG
CCTGGAACCAAGAGTGGCTGAGAAAGAGCGCAGAGGTGAGAAGGCAGAGGAGAGGTGTGG
GTCTGGGGGTCTGGGAGAGAGCAGGAGGGCTGGTAAGGGTGCACTAGATGGCCTGGGGAA
GTGCTGAGGGTCTGAGAGGGGAGTGTGTGTCCAGGCGGTAGCTGCCCCACCCACCACTGG
AGGCTGGGATGGGAGGGCGTTGGGCCCTTTCATCTGGTCCCATTTCTGGTGCTCCTGGAG
TCTCTGCTCAGCCCAGGGAAGAACTAACATGACTAACCAGGCCCATCCCAATGCTTGTTA
ACCAGGCTGGGAGGCCCACTACTGCCCCCACCCCCACACCAGGCAGTATCATCTGCTGGC
AGCTCTTTGCCTATAAAGATGAGGCCATCTGTCCTGGTCACAGCTGTGTACTCCTGGTGT
CCAGGCCTTTGGGGTCTGGTCTATTTGAGTATGTCACGGATGGTGCAGTGGGTTGAGATC
GGGGAGCGTGCTGGGCTAGAGAGGGGAACCCTAGTTAGACTTTAGGAAGCCACCTACAAT
GCTTCTAGAACAAGACAGGAACAAATAAATAAGCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCCCCGGTGCTGGGGAGAAGCCCAGCCCCAGGCCTGATAAAGAGGGGACACATCTGAG
CCTGGAACCAAGAGTGGCTGAGAAAGAGCGCAGAGGTGAGAAGGCAGAGGAGAGGTGTGG
GTCTGGGGGTCTGGGAGAGAGCAGGAGGGCTGGTAAGGGTGCACTAGATGGCCTGGGGAA
GTGCTGAGGGTCTGAGAGGGGAGTGTGTGTCCAGGCGGTAGCTGCCCCACCCACCACTGG
AGGCTGGGATGGGAGGGCGTTGGGCCCTTTCATCTGGTCCCATTTCTGGTGCTCCTGGAG
TCTCTGCTCAGCCCAGGGAAGAACTAACATGACTAACCAGGCCCATCCCAATGCTTGTTA
ACCAGGCTGGGAGGCCCACTACTGCCCCCACCCCCACACCAGGCAGTATCATCTGCTGGC
AGCTCTTTGCCTATAAAGATGAGGCCATCTGTCCTGGTCACAGCTGTGTACTCCTGGTGT
CCAGGCCTTTGGGGTCTGGTCTATTTGAGTATGTCACGGATGGTGCAGTGGGTTGAGATC
GGGGAGCGTGCTGGGCTAGAGAGGGGAACCCTAGTTAGACTTTAGGAAGCCACCTACAAT
GCTTCTAGAACAAGACAGGAACAAATAAATAAGCAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               2-107, - strand, RNAz p=0.950786

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-107, - strand, RNAz p=0.950786

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               2-632, gnl|bosTau2|chr3 (10398050-10398691)
               

               
               2-632, gnl|Hg17|chr1 (153026952-153026297)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-632, gnl|bosTau2|chr3 (10398050-10398691)
               

               
               2-632, gnl|Hg17|chr1 (153026952-153026297)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               fbs (0.350693)
               

               
               hyp (0.285673)
               

               
               fcc (0.197785)
               

               
               fat (0.147427)
               

               
               jca (0.11396)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.350693)
               

               
               hyp (0.285673)
               

               
               fcc (0.197785)
               

               
               fat (0.147427)
               

               
               jca (0.11396)

	2-632, gnl\|bosTau2\|chr3 (10398050-10398691)
	2-632, gnl\|Hg17\|chr1 (153026952-153026297)

	fbs (0.350693)
	hyp (0.285673)
	fcc (0.197785)
	fat (0.147427)
	jca (0.11396)