Ss1.1-rjca03c_c8.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTAAGATAAAATACAAGACACCCAGTTAAGTTTGAATTTCAAATAAACTATTTTTTTTTG CTTAAGTATGGTTCATGCATTATTTGGCATATATTTACTGTAAAAAAAAAAAAGTATCTG AAATTCAGACTTAACATGTTGGGGGTTTTTTTGGCTTTGTTTTGTTTTGTTTTACTCAAT CTGGCAACCCTATCGATTTGGTCATGGAAAATCTCTGACAGCATGTCAATTCTAGACTTC ACTATCTTTCACATGGAATGGAAGACCTTTTTTCCCTCACCCTCTACTTTCCAAAAGAGG GCATCAAGGAACTCAGCCTGCCTACGTGGTGGGTTTCTATTCAAGACATCTTTATGATTA TATTTAACCTGTAATTGTGCTTTGGCGAAATGTCTAACAGTACTTGTAACTGTTTAATAT TCAATAAAAAATTTTTTTAAAGTAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTAAGATAAAATACAAGACACCCAGTTAAGTTTGAATTTCAAATAAACTATTTTTTTTTG CTTAAGTATGGTTCATGCATTATTTGGCATATATTTACTGTAAAAAAAAAAAAGTATCTG AAATTCAGACTTAACATGTTGGGGGTTTTTTTGGCTTTGTTTTGTTTTGTTTTACTCAAT CTGGCAACCCTATCGATTTGGTCATGGAAAATCTCTGACAGCATGTCAATTCTAGACTTC ACTATCTTTCACATGGAATGGAAGACCTTTTTTCCCTCACCCTCTACTTTCCAAAAGAGG GCATCAAGGAACTCAGCCTGCCTACGTGGTGGGTTTCTATTCAAGACATCTTTATGATTA TATTTAACCTGTAATTGTGCTTTGGCGAAATGTCTAACAGTACTTGTAACTGTTTAATAT TCAATAAAAAATTTTTTTAAAGTAAAAAAAAAAAAA |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 230-376, + strand, RNAz p=0.794338 | |
| 233-381, - strand, RNAz p=0.932154 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 230-376, + strand, RNAz p=0.794338 | |
| 233-381, - strand, RNAz p=0.932154 |
| Aligned organism(s): 6 entry(ies) | More info |
| Aligned organism(s): 6 entry(ies) | Help | Less info |
| 11-444, gnl|bosTau2|chr27 (17712967-17713399) | |
| 11-444, gnl|Hg17|chr8 (9676827-9677266) | |
| 11-444, gnl|Mm7|chr8 (33588250-33587814) | |
| 115-443, gnl|bosTau2|chr26 (33681376-33681711) | |
| 115-443, gnl|Hg17|chr8 (9676935-9677265) | |
| 115-443, gnl|Mm7|chr8 (33588145-33587815) |
| Aligned organism(s): 6 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 11-444, gnl|bosTau2|chr27 (17712967-17713399) | |
| 11-444, gnl|Hg17|chr8 (9676827-9677266) | |
| 11-444, gnl|Mm7|chr8 (33588250-33587814) | |
| 115-443, gnl|bosTau2|chr26 (33681376-33681711) | |
| 115-443, gnl|Hg17|chr8 (9676935-9677265) | |
| 115-443, gnl|Mm7|chr8 (33588145-33587815) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| csp (0.161186) | |
| eru (0.120048) | |
| jca (0.11396) |