Ss1.1-rjca03c_l18.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCACGTGCACAATCAATTCTTTAATTATTTTGGAGGTGCAGTGAGAGCGGGCCTGCAGAG TTCTTGCCAGCTGCTACCTCACGGCCGGCTCTGGGGCCACAGCCCTGCCTGAGTGAAGAG CTGGGGTCAGGCCATGGAGCTCTCCTTGCAAGACTCCAATCCTGGAGCCAGCGGTACTCA CAACACCAACATCTGGCGGCCTTCTTGAGCCAAGGAGTCAACAGAGATATTCATGACCCC CTCTAGCCCACGTTCAGCCTTCACGGGATACCTGTAGGGCCAGGTACGGCCAAGCCCAGG CAGTCAGACCTCCTGGAGAAGGTGCTGGGCTCCCTGCTCCAGGGTGAGCAGTGGCTTAGG ACCCCCACAGGGGTGGTAACTCGGGTGATCCAGGGACAAGTGCACAGGAGGAGGCAGCAG CGTCAGCATGTGGCTGTTACAGGGATGTCTGGAGAGAGAAGCCCAGGAAGTGTGGGAGGC AGTTAGGGTGGGTGAGCCCAAGGGGCTACCAGCGAACCAGCCTCAGCTCGATGGTTTCTC CATCTCTGGGTCTGTAATCAGCAATACCTTGCAGCAGGGGGATGTTGGGGGCTCGGAGGA GCTGCCAGTACTCAGGTCCCTCAGCTTTTTTCCCCATCACAGAGGTCAGGTAGGGGCCTG ACAAGGAGGCCTGTGTTCCATACCTGAATCTTCCGTGCTCCTGGGCCTTCTTCAGGACAT CTTCCAAGGAGGAGCCGTCAAGGACAGAGATGGAGTGTTTGTATGGAGGAAAGATGCTGG GGACCTTCAGTGTGACATGGATGACCTCTGGGACTTGTGTCTGTGAAGGAGTCTCCTTAA CTGTTTCCAATATGACTTTTGGTGCCTGGCAGTTTGGCGAGATGAGAGCCACGTAACTCT TCTGGTTCAGGACAGGCAGAAGCTGAGAAATCACGAGAGGATTCTGGAAGGCCTTGTGCT GTAGGCTGTCCAACAGAGCAGCCTTTGCCTTGAGGCATGCTGTGCCCTGCTCCTCCATGG GCTTGAGGGAGGTCATCAGGAACTGAAGAGCCAGAGGGGTGCTGTAGACATTCCCAAAGT GGCCCTCTGGGGTCTGGGCCCTAAGGATCCTCTCTTGCACTCTCTGGATGGCCAGGGCAA TCCGGTCTCTCTGATTGAGGTTGAGGTTGGATACCTCCAGACAGGAGAAGGCCAAGCCTG CCATGGCTGTTGTGTCCACAGAGAGGTCAGGATGCTGTTCATGTTCTATGGCGTACAGGA GCTTGCCCACCACACTGTCATGGACCCGCTTCCGGTGGAGACACAGGGCCAGGATGCTCA GGCCATACTGGTAGTAGCTGGTGTGGGGGTGGCCCTTGTGATTGTGCCCAATAGCCCTCT TCTCAGTCTCCAGGAACCTCTTCAGCTGTGAGACCAGCCTGTCCCCCTTGCGGCTTCCAA CAAACTCACAATTGGCCCGGAGAGCGAGCAGATAGAGGGCCAGCTGGCCCATAGAGGGCT TGGCCTCCGAATCACTCTTGTCATTGCTGGAGACAGACCTCAGGAGGCTCTGCTGGTAGC TGAGCTTGAGGCTGTGCAGGTAGTGGGCCTCCTTGGGCCCGGCCTGCAGGCCAGAGAGGC GCAGGCCCACGTAGATACTGGGGTTCAGCTGCTCCGGGGAGAGCCGGTCCATCCAGGGCA AGAGGCGCTGGCCCAGTCTCTCCACCAGGTCGCTGTCCACCTTTGCTATTTCGCAGGTCC AGGCAAGAGCTCCCAGGCCCCCCAGCAGGAGGAGAAGGGCCCCAAGGCACCCCATGGCAG GAGCAGGGGTGAGCAGCAGGCAGGGAGTGGGACAGACTCCTAGGACTGGCCTTGCAGAGG CTCTCCTGACCACAGCCAGTCACTGCTCTGAAAGAGGCAGCTTCCTGTCACTGATTAATC CCTCCACGCCCGGCGGCTGCGGCACACTCCTGTACCCCTCCCAGAAGGAGCCCCTGAAAG TGCCCACCCTGGCCTGGGACAGGGACAGGACTTGGAGCTGCAGTGGTCACATGAGCGACT GCTGAAGTCAGCTATTTTCTGCCCGCCTGCCCAGAGGCGGGGAGCTGGACCGAATCAGAC AGGCCGGTTTTCTCAACCAGTCAGAAAGCTGGGAGCCTCCTCCGAGGTGGCTTCTCAGGC AAGACAAGTTTCGACGCCTACTGTTACTATGACAACGCAATTCTTGCCGCTGCTCCCAGA GGAGAGACTCCCCTATGCATCCCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCACGTGCACAATCAATTCTTTAATTATTTTGGAGGTGCAGTGAGAGCGGGCCTGCAGAG TTCTTGCCAGCTGCTACCTCACGGCCGGCTCTGGGGCCACAGCCCTGCCTGAGTGAAGAG CTGGGGTCAGGCCATGGAGCTCTCCTTGCAAGACTCCAATCCTGGAGCCAGCGGTACTCA CAACACCAACATCTGGCGGCCTTCTTGAGCCAAGGAGTCAACAGAGATATTCATGACCCC CTCTAGCCCACGTTCAGCCTTCACGGGATACCTGTAGGGCCAGGTACGGCCAAGCCCAGG CAGTCAGACCTCCTGGAGAAGGTGCTGGGCTCCCTGCTCCAGGGTGAGCAGTGGCTTAGG ACCCCCACAGGGGTGGTAACTCGGGTGATCCAGGGACAAGTGCACAGGAGGAGGCAGCAG CGTCAGCATGTGGCTGTTACAGGGATGTCTGGAGAGAGAAGCCCAGGAAGTGTGGGAGGC AGTTAGGGTGGGTGAGCCCAAGGGGCTACCAGCGAACCAGCCTCAGCTCGATGGTTTCTC CATCTCTGGGTCTGTAATCAGCAATACCTTGCAGCAGGGGGATGTTGGGGGCTCGGAGGA GCTGCCAGTACTCAGGTCCCTCAGCTTTTTTCCCCATCACAGAGGTCAGGTAGGGGCCTG ACAAGGAGGCCTGTGTTCCATACCTGAATCTTCCGTGCTCCTGGGCCTTCTTCAGGACAT CTTCCAAGGAGGAGCCGTCAAGGACAGAGATGGAGTGTTTGTATGGAGGAAAGATGCTGG GGACCTTCAGTGTGACATGGATGACCTCTGGGACTTGTGTCTGTGAAGGAGTCTCCTTAA CTGTTTCCAATATGACTTTTGGTGCCTGGCAGTTTGGCGAGATGAGAGCCACGTAACTCT TCTGGTTCAGGACAGGCAGAAGCTGAGAAATCACGAGAGGATTCTGGAAGGCCTTGTGCT GTAGGCTGTCCAACAGAGCAGCCTTTGCCTTGAGGCATGCTGTGCCCTGCTCCTCCATGG GCTTGAGGGAGGTCATCAGGAACTGAAGAGCCAGAGGGGTGCTGTAGACATTCCCAAAGT GGCCCTCTGGGGTCTGGGCCCTAAGGATCCTCTCTTGCACTCTCTGGATGGCCAGGGCAA TCCGGTCTCTCTGATTGAGGTTGAGGTTGGATACCTCCAGACAGGAGAAGGCCAAGCCTG CCATGGCTGTTGTGTCCACAGAGAGGTCAGGATGCTGTTCATGTTCTATGGCGTACAGGA GCTTGCCCACCACACTGTCATGGACCCGCTTCCGGTGGAGACACAGGGCCAGGATGCTCA GGCCATACTGGTAGTAGCTGGTGTGGGGGTGGCCCTTGTGATTGTGCCCAATAGCCCTCT TCTCAGTCTCCAGGAACCTCTTCAGCTGTGAGACCAGCCTGTCCCCCTTGCGGCTTCCAA CAAACTCACAATTGGCCCGGAGAGCGAGCAGATAGAGGGCCAGCTGGCCCATAGAGGGCT TGGCCTCCGAATCACTCTTGTCATTGCTGGAGACAGACCTCAGGAGGCTCTGCTGGTAGC TGAGCTTGAGGCTGTGCAGGTAGTGGGCCTCCTTGGGCCCGGCCTGCAGGCCAGAGAGGC GCAGGCCCACGTAGATACTGGGGTTCAGCTGCTCCGGGGAGAGCCGGTCCATCCAGGGCA AGAGGCGCTGGCCCAGTCTCTCCACCAGGTCGCTGTCCACCTTTGCTATTTCGCAGGTCC AGGCAAGAGCTCCCAGGCCCCCCAGCAGGAGGAGAAGGGCCCCAAGGCACCCCATGGCAG GAGCAGGGGTGAGCAGCAGGCAGGGAGTGGGACAGACTCCTAGGACTGGCCTTGCAGAGG CTCTCCTGACCACAGCCAGTCACTGCTCTGAAAGAGGCAGCTTCCTGTCACTGATTAATC CCTCCACGCCCGGCGGCTGCGGCACACTCCTGTACCCCTCCCAGAAGGAGCCCCTGAAAG TGCCCACCCTGGCCTGGGACAGGGACAGGACTTGGAGCTGCAGTGGTCACATGAGCGACT GCTGAAGTCAGCTATTTTCTGCCCGCCTGCCCAGAGGCGGGGAGCTGGACCGAATCAGAC AGGCCGGTTTTCTCAACCAGTCAGAAAGCTGGGAGCCTCCTCCGAGGTGGCTTCTCAGGC AAGACAAGTTTCGACGCCTACTGTTACTATGACAACGCAATTCTTGCCGCTGCTCCCAGA GGAGAGACTCCCCTATGCATCCCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 21-1737, - strand, RNAz p=0.810653 | |
| 443-557, + strand, RNAz p=0.669331 | |
| 1231-1369, - strand, RNAz p=0.994367 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 21-1737, - strand, RNAz p=0.810653 | |
| 443-557, + strand, RNAz p=0.669331 | |
| 1231-1369, - strand, RNAz p=0.994367 |
| Aligned organism(s): 54 entry(ies) | More info |
| Aligned organism(s): 54 entry(ies) | Help | Less info |
| 2-181, gnl|bosTau2|chr17 (42793186-42793005) | |
| 2-181, gnl|canFam2|chr26 (26739984-26740281) | |
| 2-181, gnl|dasNov1|scaffold_47766 (11216-10930) | |
| 2-181, gnl|echTel1|scaffold_194873 (6804-7042) | |
| 2-181, gnl|hg17|chr22 (29347285-29347590) | |
| 2-181, gnl|Hg17|chr22 (29347600-29347400) | |
| 2-181, gnl|loxAfr1|scaffold_13077 (5169-5463) | |
| 2-181, gnl|mm7|chr11 (3869489-3869201) | |
| 2-181, gnl|Mm7|chr11 (3869191-3869374) | |
| 2-181, gnl|panTro1|chr23 (29439292-29439596) | |
| 2-181, gnl|rheMac2|chr10 (74489611-74489916) | |
| 2-181, gnl|rn3|chr14 (84598633-84598340) | |
| 258-589, gnl|bosTau2|chr17 (42792952-42792620) | |
| 258-589, gnl|Hg17|chr22 (29347324-29346979) | |
| 258-589, gnl|Mm7|chr11 (3869447-3869733) | |
| 856-1045, gnl|bosTau2|chr17 (42786554-42786365) | |
| 856-1045, gnl|canFam2|chr26 (26733003-26733478) | |
| 856-1045, gnl|echTel1|scaffold_84240 (293-732) | |
| 856-1045, gnl|hg17|chr22 (29336053-29336514) | |
| 856-1045, gnl|Hg17|chr22 (29336328-29336139) | |
| 856-1045, gnl|mm7|chr11 (3875668-3875233) | |
| 856-1045, gnl|Mm7|chr11 (3875399-3875588) | |
| 856-1045, gnl|oryCun1|scaffold_135580 (4296-3825) | |
| 856-1045, gnl|panTro1|chr23 (29427796-29428279) | |
| 856-1045, gnl|rheMac2|chr10 (74477269-74477729) | |
| 856-1045, gnl|rn3|chr14 (84605153-84604725) | |
| 1231-1369, gnl|bosTau2|chr17 (42784910-42784772) | |
| 1231-1369, gnl|canFam2|chr26 (26731283-26731442) | |
| 1231-1369, gnl|dasNov1|scaffold_143159 (1227-1410) | |
| 1231-1369, gnl|hg17|chr22 (29334868-29335019) | |
| 1231-1369, gnl|Hg17|chr22 (29335018-29334889) | |
| 1231-1369, gnl|loxAfr1|scaffold_33131 (15755-15940) | |
| 1231-1369, gnl|mm7|chr11 (3877128-3876969) | |
| 1231-1369, gnl|Mm7|chr11 (3876969-3877106) | |
| 1231-1369, gnl|oryCun1|scaffold_763 (1965-1805) | |
| 1231-1369, gnl|panTro1|chr23 (29426613-29426764) | |
| 1231-1369, gnl|rheMac2|chr10 (74476086-74476239) | |
| 1231-1369, gnl|rn3|chr14 (84606620-84606461) | |
| 1536-1737, gnl|bosTau2|chr17 (42781229-42781028) | |
| 1536-1737, gnl|canFam2|chr26 (26728937-26729234) | |
| 1536-1737, gnl|dasNov1|scaffold_137877 (4823-5105) | |
| 1536-1737, gnl|echTel1|scaffold_271463 (7782-7487) | |
| 1536-1737, gnl|hg17|chr22 (29331329-29331624) | |
| 1536-1737, gnl|Hg17|chr22 (29331607-29331406) | |
| 1536-1737, gnl|loxAfr1|scaffold_33131 (12854-13148) | |
| 1536-1737, gnl|mm7|chr11 (3879677-3879372) | |
| 1536-1737, gnl|Mm7|chr11 (3879390-3879591) | |
| 1536-1737, gnl|oryCun1|scaffold_763 (3559-3267) | |
| 1536-1737, gnl|panTro1|chr23 (29422965-29423264) | |
| 1536-1737, gnl|rheMac2|chr10 (74472683-74472978) | |
| 1536-1737, gnl|rn3|chr14 (84608966-84608659) | |
| 1949-2146, gnl|bosTau2|chr17 (42777279-42777083) | |
| 1949-2146, gnl|Hg17|chr22 (29327437-29327124) | |
| 1949-2146, gnl|Mm7|chr11 (3883978-3884170) |
| Aligned organism(s): 54 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-181, gnl|bosTau2|chr17 (42793186-42793005) | |
| 2-181, gnl|canFam2|chr26 (26739984-26740281) | |
| 2-181, gnl|dasNov1|scaffold_47766 (11216-10930) | |
| 2-181, gnl|echTel1|scaffold_194873 (6804-7042) | |
| 2-181, gnl|hg17|chr22 (29347285-29347590) | |
| 2-181, gnl|Hg17|chr22 (29347600-29347400) | |
| 2-181, gnl|loxAfr1|scaffold_13077 (5169-5463) | |
| 2-181, gnl|mm7|chr11 (3869489-3869201) | |
| 2-181, gnl|Mm7|chr11 (3869191-3869374) | |
| 2-181, gnl|panTro1|chr23 (29439292-29439596) | |
| 2-181, gnl|rheMac2|chr10 (74489611-74489916) | |
| 2-181, gnl|rn3|chr14 (84598633-84598340) | |
| 258-589, gnl|bosTau2|chr17 (42792952-42792620) | |
| 258-589, gnl|Hg17|chr22 (29347324-29346979) | |
| 258-589, gnl|Mm7|chr11 (3869447-3869733) | |
| 856-1045, gnl|bosTau2|chr17 (42786554-42786365) | |
| 856-1045, gnl|canFam2|chr26 (26733003-26733478) | |
| 856-1045, gnl|echTel1|scaffold_84240 (293-732) | |
| 856-1045, gnl|hg17|chr22 (29336053-29336514) | |
| 856-1045, gnl|Hg17|chr22 (29336328-29336139) | |
| 856-1045, gnl|mm7|chr11 (3875668-3875233) | |
| 856-1045, gnl|Mm7|chr11 (3875399-3875588) | |
| 856-1045, gnl|oryCun1|scaffold_135580 (4296-3825) | |
| 856-1045, gnl|panTro1|chr23 (29427796-29428279) | |
| 856-1045, gnl|rheMac2|chr10 (74477269-74477729) | |
| 856-1045, gnl|rn3|chr14 (84605153-84604725) | |
| 1231-1369, gnl|bosTau2|chr17 (42784910-42784772) | |
| 1231-1369, gnl|canFam2|chr26 (26731283-26731442) | |
| 1231-1369, gnl|dasNov1|scaffold_143159 (1227-1410) | |
| 1231-1369, gnl|hg17|chr22 (29334868-29335019) | |
| 1231-1369, gnl|Hg17|chr22 (29335018-29334889) | |
| 1231-1369, gnl|loxAfr1|scaffold_33131 (15755-15940) | |
| 1231-1369, gnl|mm7|chr11 (3877128-3876969) | |
| 1231-1369, gnl|Mm7|chr11 (3876969-3877106) | |
| 1231-1369, gnl|oryCun1|scaffold_763 (1965-1805) | |
| 1231-1369, gnl|panTro1|chr23 (29426613-29426764) | |
| 1231-1369, gnl|rheMac2|chr10 (74476086-74476239) | |
| 1231-1369, gnl|rn3|chr14 (84606620-84606461) | |
| 1536-1737, gnl|bosTau2|chr17 (42781229-42781028) | |
| 1536-1737, gnl|canFam2|chr26 (26728937-26729234) | |
| 1536-1737, gnl|dasNov1|scaffold_137877 (4823-5105) | |
| 1536-1737, gnl|echTel1|scaffold_271463 (7782-7487) | |
| 1536-1737, gnl|hg17|chr22 (29331329-29331624) | |
| 1536-1737, gnl|Hg17|chr22 (29331607-29331406) | |
| 1536-1737, gnl|loxAfr1|scaffold_33131 (12854-13148) | |
| 1536-1737, gnl|mm7|chr11 (3879677-3879372) | |
| 1536-1737, gnl|Mm7|chr11 (3879390-3879591) | |
| 1536-1737, gnl|oryCun1|scaffold_763 (3559-3267) | |
| 1536-1737, gnl|panTro1|chr23 (29422965-29423264) | |
| 1536-1737, gnl|rheMac2|chr10 (74472683-74472978) | |
| 1536-1737, gnl|rn3|chr14 (84608966-84608659) | |
| 1949-2146, gnl|bosTau2|chr17 (42777279-42777083) | |
| 1949-2146, gnl|Hg17|chr22 (29327437-29327124) | |
| 1949-2146, gnl|Mm7|chr11 (3883978-3884170) |
| Expressed library(ies): 20 entry(ies) | More info |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
| nco (0.646935) | |
| amn (0.417711) | |
| nlu (0.383362) | |
| jej (0.296765) | |
| cov (0.264306) | |
| ebs (0.236602) | |
| jca (0.22792) | |
| nms (0.213858) | |
| mas (0.210305) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| hlv (0.139256) | |
| pla (0.133672) | |
| eep (0.122564) | |
| cly (0.120642) | |
| eru (0.120048) | |
| clu (0.119646) | |
| med (0.116252) |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nco (0.646935) | |
| amn (0.417711) | |
| nlu (0.383362) | |
| jej (0.296765) | |
| cov (0.264306) | |
| ebs (0.236602) | |
| jca (0.22792) | |
| nms (0.213858) | |
| mas (0.210305) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| hlv (0.139256) | |
| pla (0.133672) | |
| eep (0.122564) | |
| cly (0.120642) | |
| eru (0.120048) | |
| clu (0.119646) | |
| med (0.116252) |