Non-Coding RNA Search

Ss1.1-rjca03c_l6.5

Sequence:


               
               GACAGCAGCCGCCCAGCCGCTCGGAGCTGAACCGGCAGCATGAAGGCCCTCCTGGCCCTG
CCGCTGCTGCTGCTCATATCCGCTGACCGCTGCGCCCCGCAGGTCTTGGGGATCCGGGGA
GACGCCCTGGACAAGTTCTGCCCGCAGCAGCCCCTGGACTGCGACGACATCTACGCCCAG
GGCTACCAGATAGACGGCGTGTACCTCATCTACCCCTCGGGCCCCAGCCTGCCCGTGCCC
GTCTTCTGCGACATGACCACCGAGGGGGGCAAGTGGACGGTTTTCCAGAAGAGGTTCAAC
GGCTCCGTGAGTTTCTTCCGGGGCTGGAATGACTACAAGCTGGGCTTCGGCCGCGCCGAC
GGGGAGTACTGGCTGGGTCTGCAGAACCTGCACCTGCTGACCCTGAAGCACAAGTACGAG
CTCAGGGTGGACCTGGAGGACTTCGAGAACAACACGGCCTTCGCCAAGTACCACGACTTC
TCCATCTCCCCCAACGCCGTCAGCGCCGAGGAGGACGGCTACACCCTCTACGTGGCCGAC
TTCGAGGACGGCGGCGCAGGCGACTCCCTGACCTACCACAGCGGCCAGAAGTTCTCCACC
TTCGACCGGGACCAGGACCTCTTCGTGCAGAACTGCGCGGCCCTCTCCTCGGGCGCCTTC
TGGTTCCGCAGCTGCCACTTCGCCAACCTCAACGGCTTCTACCTGGGCGGCTCCCACCTC
TCCTACGCCAACGGCATCAACTGGGCCCAGTGGAAGGGCTTCTACTACTCCCTCAAGCGC
ACGGAGATGAAGATTCGCCGGGCCTGAGGGCGGCCTCATGCCCGCACCTGCTGCCGGCCC
GCCCGCCCTCAGCCTCCCACCTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACAGCAGCCGCCCAGCCGCTCGGAGCTGAACCGGCAGCATGAAGGCCCTCCTGGCCCTG
CCGCTGCTGCTGCTCATATCCGCTGACCGCTGCGCCCCGCAGGTCTTGGGGATCCGGGGA
GACGCCCTGGACAAGTTCTGCCCGCAGCAGCCCCTGGACTGCGACGACATCTACGCCCAG
GGCTACCAGATAGACGGCGTGTACCTCATCTACCCCTCGGGCCCCAGCCTGCCCGTGCCC
GTCTTCTGCGACATGACCACCGAGGGGGGCAAGTGGACGGTTTTCCAGAAGAGGTTCAAC
GGCTCCGTGAGTTTCTTCCGGGGCTGGAATGACTACAAGCTGGGCTTCGGCCGCGCCGAC
GGGGAGTACTGGCTGGGTCTGCAGAACCTGCACCTGCTGACCCTGAAGCACAAGTACGAG
CTCAGGGTGGACCTGGAGGACTTCGAGAACAACACGGCCTTCGCCAAGTACCACGACTTC
TCCATCTCCCCCAACGCCGTCAGCGCCGAGGAGGACGGCTACACCCTCTACGTGGCCGAC
TTCGAGGACGGCGGCGCAGGCGACTCCCTGACCTACCACAGCGGCCAGAAGTTCTCCACC
TTCGACCGGGACCAGGACCTCTTCGTGCAGAACTGCGCGGCCCTCTCCTCGGGCGCCTTC
TGGTTCCGCAGCTGCCACTTCGCCAACCTCAACGGCTTCTACCTGGGCGGCTCCCACCTC
TCCTACGCCAACGGCATCAACTGGGCCCAGTGGAAGGGCTTCTACTACTCCCTCAAGCGC
ACGGAGATGAAGATTCGCCGGGCCTGAGGGCGGCCTCATGCCCGCACCTGCTGCCGGCCC
GCCCGCCCTCAGCCTCCCACCTGG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|790817|gb|AAB00968.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|790817|gb|AAB00968.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               124-281, gnl|bosTau2|chr19 (26946236-26946079)
               

               
               124-281, gnl|Hg17|chr17 (19230371-19230214)
               

               
               124-281, gnl|Mm7|chr11 (61567595-61567752)
               


               
               556-832, gnl|bosTau2|chr11 (86703139-86703412)
               

               
               556-832, gnl|Hg17|chr9 (135027840-135027564)
               

               
               556-832, gnl|Mm7|chr2 (28084137-28083855)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               124-281, gnl|bosTau2|chr19 (26946236-26946079)
               

               
               124-281, gnl|Hg17|chr17 (19230371-19230214)
               

               
               124-281, gnl|Mm7|chr11 (61567595-61567752)
               


               
               556-832, gnl|bosTau2|chr11 (86703139-86703412)
               

               
               556-832, gnl|Hg17|chr9 (135027840-135027564)
               

               
               556-832, gnl|Mm7|chr2 (28084137-28083855)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               pla (0.66836)
               

               
               nlu (0.575043)
               

               
               ese (0.253004)
               

               
               eep (0.245128)
               

               
               nje (0.16592)
               

               
               hyp (0.142837)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               med (0.116252)
               

               
               jca (0.11396)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.66836)
               

               
               nlu (0.575043)
               

               
               ese (0.253004)
               

               
               eep (0.245128)
               

               
               nje (0.16592)
               

               
               hyp (0.142837)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               med (0.116252)
               

               
               jca (0.11396)

	124-281, gnl\|bosTau2\|chr19 (26946236-26946079)
	124-281, gnl\|Hg17\|chr17 (19230371-19230214)
	124-281, gnl\|Mm7\|chr11 (61567595-61567752)

	556-832, gnl\|bosTau2\|chr11 (86703139-86703412)
	556-832, gnl\|Hg17\|chr9 (135027840-135027564)
	556-832, gnl\|Mm7\|chr2 (28084137-28083855)

	pla (0.66836)
	nlu (0.575043)
	ese (0.253004)
	eep (0.245128)
	nje (0.16592)
	hyp (0.142837)
	eru (0.120048)
	clu (0.119646)
	med (0.116252)
	jca (0.11396)