Non-Coding RNA Search

Ss1.1-rjca03c_n4.5

Sequence:


               
               TCATCCTCACCGAGGCAGGAGAGCTCCCAGTAGGGCCAACCCCACCCTGCGGCGGAGCCT
CTGGTATCTCAGCTTGTGTCAAGCTTGTTATCATGTAAATTCTGTACAAAGAATTGTTAT
TTTTCTCTTTTTTTGTCGTTGGTGGCTTTGTTGTGTTTTTCTTTCTTTCTTTTTTTATTA
TTTCTTCACCCCCATGCCCTCTCTGTTTGAGACTGTGCCTGCCGGTTTCAAGATCGATGA
AATCGGGGGCATTAAGACACAGAGGGGGACCTGGGCACAGCGGCAAACTTCTCTTCCTTT
TGCGGTTTTCTGCCTCATTGTGCAACCGAGGAAATATTTATTTTTCACATGGGGAAATAT
GTAGTTTGTAGAGATGGCTGATTTAAGTTACTTCTTCAGCCCCCAAGGGGCTGTCTTCAG
TCTCTCCCCTCCTCCCTAAAAGAAGTGGAGGGGGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCATCCTCACCGAGGCAGGAGAGCTCCCAGTAGGGCCAACCCCACCCTGCGGCGGAGCCT
CTGGTATCTCAGCTTGTGTCAAGCTTGTTATCATGTAAATTCTGTACAAAGAATTGTTAT
TTTTCTCTTTTTTTGTCGTTGGTGGCTTTGTTGTGTTTTTCTTTCTTTCTTTTTTTATTA
TTTCTTCACCCCCATGCCCTCTCTGTTTGAGACTGTGCCTGCCGGTTTCAAGATCGATGA
AATCGGGGGCATTAAGACACAGAGGGGGACCTGGGCACAGCGGCAAACTTCTCTTCCTTT
TGCGGTTTTCTGCCTCATTGTGCAACCGAGGAAATATTTATTTTTCACATGGGGAAATAT
GTAGTTTGTAGAGATGGCTGATTTAAGTTACTTCTTCAGCCCCCAAGGGGCTGTCTTCAG
TCTCTCCCCTCCTCCCTAAAAGAAGTGGAGGGGGGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               183-282, - strand, RNAz p=0.999813

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               183-282, - strand, RNAz p=0.999813

Similar Transcript(s): 3 entry(ies)

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Similar Transcript(s): 3 entry(ies)

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               189-282, AGENCOURT_6422309 NIH_MGC_71 Homo sapiens cDNA clone IMAGE 
(gb|BM459871.1|), blast E-value=1e-16, identity=88.42% 
               

               
               189-282, AGENCOURT_6497230 NIH_MGC_124 Homo sapiens cDNA clone IMAGE 
(gb|BM545418.1|), blast E-value=1e-16, identity=88.42% 
               

               
               189-282, K-EST0015297 S6SNU620 Homo sapiens cDNA clone S6SNU620-5-G07 5', 
(gb|BM742412.1|), blast E-value=1e-16, identity=88.42%

Similar Transcript(s): 3 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               189-282, AGENCOURT_6422309 NIH_MGC_71 Homo sapiens cDNA clone IMAGE 
(gb|BM459871.1|), blast E-value=1e-16, identity=88.42% 
               

               
               189-282, AGENCOURT_6497230 NIH_MGC_124 Homo sapiens cDNA clone IMAGE 
(gb|BM545418.1|), blast E-value=1e-16, identity=88.42% 
               

               
               189-282, K-EST0015297 S6SNU620 Homo sapiens cDNA clone S6SNU620-5-G07 5', 
(gb|BM742412.1|), blast E-value=1e-16, identity=88.42%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-455, gnl|bosTau2|chr17 (28750897-28751362)
               

               
               1-455, gnl|Hg17|chr12 (120732348-120732806)
               

               
               1-455, gnl|Mm7|chr5 (122398090-122398667)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-455, gnl|bosTau2|chr17 (28750897-28751362)
               

               
               1-455, gnl|Hg17|chr12 (120732348-120732806)
               

               
               1-455, gnl|Mm7|chr5 (122398090-122398667)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               ill (0.175593)
               

               
               csp (0.161186)
               

               
               pty (0.142714)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)
               

               
               csp (0.161186)
               

               
               pty (0.142714)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

	189-282, AGENCOURT_6422309 NIH_MGC_71 Homo sapiens cDNA clone IMAGE (gb\|BM459871.1\|), blast E-value=1e-16, identity=88.42%
	189-282, AGENCOURT_6497230 NIH_MGC_124 Homo sapiens cDNA clone IMAGE (gb\|BM545418.1\|), blast E-value=1e-16, identity=88.42%
	189-282, K-EST0015297 S6SNU620 Homo sapiens cDNA clone S6SNU620-5-G07 5', (gb\|BM742412.1\|), blast E-value=1e-16, identity=88.42%

	1-455, gnl\|bosTau2\|chr17 (28750897-28751362)
	1-455, gnl\|Hg17\|chr12 (120732348-120732806)
	1-455, gnl\|Mm7\|chr5 (122398090-122398667)

	ill (0.175593)
	csp (0.161186)
	pty (0.142714)
	jca (0.11396)
	jej (0.0989218)