Non-Coding RNA Search

Ss1.1-rjca03c_p18.5

Sequence:


               
               CGCACAGTACAGAAAAATGCCAAGTACATCTGCCTGGCTAACAAGGACTGCCCTGTGGAC
AAGAGGCGGCGAAACCGCTGCCAGTTCTGCCGCTTCCAGAAGTGCCTGGCTGTGGGCATG
GTGAAGGAAGTTGTCCGGACAGACAGCCTGAAAGGCCGGCGCGGGCGGCTCCCTTCAAAG
CCCAAGCAGTCCCCGGATGCCTCGCCAGCCAATCTCCTCACCTCCCTGGTCCGGGCGCAC
CTGGACTCAGGGCCCAGCACTTCCAAACTGGACTATTCCCAGTTCCAGGAGCTGGTGCTG
CCCCACTTCGGGAAGGAGGACGCCGGGGATGTGCAGCAGTTCTATGACCTGCTCTCGGGT
TCCCTGGAGGTTATCCGCAAGTGGGCTGAGAAGGTTCCCGGCTTTGCCGAGCTGTCCCCC
AGTGACCAGGACCTGCTGCTGGAGTCGGCCTTCCTGGAGCTCTTCATTCTCCGTTTGGCC
TACCGGTCTAAGCCGGCTGAGGGGAAGCTCATCTTCTGCTCAGGCCTGGTGCTGCACCGG
CTGCAGTGCGCCCGCGGCTTTGGGGACTGGATCGACAGCATCCTGGCCTTCTCTCGGTCC
CTGCACAGCTTGGTTGTCGATGTCCCTGCCTTTGCCTGCCTCTCCGCGCTCGTCCTCATC
ACAGACCGGCATGGGCTGCAGGAGCCACGGCGGGTGGAGGAGCTGCAGAACCGCATCGCC
AGCTGCCTGAAGGAACACGTCTCGGCCGAGGCGGGCGAGCCCCAGCCGGCCAGCTGCCTG
TCCCGCCTGCTGGGCAAGCTGCCCGAGCTGCGGACCCTGTGCACCCAGGGCCTGCAGCGC
ATCTTCTACCTCAAGTTGGAGGACTTGGTGCCCCCTCCGCCCATCGTCGACAAGATCTTT
ATGGACACGCTGCCCTTCTGACCCCGGCCCGGGAGCAGACGTGCGCCGTGTGTGTGCACG
CGCGTGCGCCACCCCATGTGCCTTTAGCCCATGGCCCACGGACCCCTGGAGCATCACCCT
GGCCTGGGCCTGAGCTGCAGACTGGCCGCCCCCTCCCCAGCTTGCTCTGGGAAGTGGGCC
GGAAGCTCACGCCCTGGGGGTGGGGAGGTGCATCCACAGGGGTGACCCTGACTCTTTGTC
TTACGCCCCAGCCCAGCCCTGGCCTTCATGTTTTTTGTAAGATAAACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCACAGTACAGAAAAATGCCAAGTACATCTGCCTGGCTAACAAGGACTGCCCTGTGGAC
AAGAGGCGGCGAAACCGCTGCCAGTTCTGCCGCTTCCAGAAGTGCCTGGCTGTGGGCATG
GTGAAGGAAGTTGTCCGGACAGACAGCCTGAAAGGCCGGCGCGGGCGGCTCCCTTCAAAG
CCCAAGCAGTCCCCGGATGCCTCGCCAGCCAATCTCCTCACCTCCCTGGTCCGGGCGCAC
CTGGACTCAGGGCCCAGCACTTCCAAACTGGACTATTCCCAGTTCCAGGAGCTGGTGCTG
CCCCACTTCGGGAAGGAGGACGCCGGGGATGTGCAGCAGTTCTATGACCTGCTCTCGGGT
TCCCTGGAGGTTATCCGCAAGTGGGCTGAGAAGGTTCCCGGCTTTGCCGAGCTGTCCCCC
AGTGACCAGGACCTGCTGCTGGAGTCGGCCTTCCTGGAGCTCTTCATTCTCCGTTTGGCC
TACCGGTCTAAGCCGGCTGAGGGGAAGCTCATCTTCTGCTCAGGCCTGGTGCTGCACCGG
CTGCAGTGCGCCCGCGGCTTTGGGGACTGGATCGACAGCATCCTGGCCTTCTCTCGGTCC
CTGCACAGCTTGGTTGTCGATGTCCCTGCCTTTGCCTGCCTCTCCGCGCTCGTCCTCATC
ACAGACCGGCATGGGCTGCAGGAGCCACGGCGGGTGGAGGAGCTGCAGAACCGCATCGCC
AGCTGCCTGAAGGAACACGTCTCGGCCGAGGCGGGCGAGCCCCAGCCGGCCAGCTGCCTG
TCCCGCCTGCTGGGCAAGCTGCCCGAGCTGCGGACCCTGTGCACCCAGGGCCTGCAGCGC
ATCTTCTACCTCAAGTTGGAGGACTTGGTGCCCCCTCCGCCCATCGTCGACAAGATCTTT
ATGGACACGCTGCCCTTCTGACCCCGGCCCGGGAGCAGACGTGCGCCGTGTGTGTGCACG
CGCGTGCGCCACCCCATGTGCCTTTAGCCCATGGCCCACGGACCCCTGGAGCATCACCCT
GGCCTGGGCCTGAGCTGCAGACTGGCCGCCCCCTCCCCAGCTTGCTCTGGGAAGTGGGCC
GGAAGCTCACGCCCTGGGGGTGGGGAGGTGCATCCACAGGGGTGACCCTGACTCTTTGTC
TTACGCCCCAGCCCAGCCCTGGCCTTCATGTTTTTTGTAAGATAAACC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61680690|pdb|1YJE|A

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61680690|pdb|1YJE|A

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               1-133, + strand, RNAz p=0.922861
               

               
               736-895, - strand, RNAz p=0.884466
               

               
               1015-1188, - strand, RNAz p=0.999758

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-133, + strand, RNAz p=0.922861
               

               
               736-895, - strand, RNAz p=0.884466
               

               
               1015-1188, - strand, RNAz p=0.999758

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-133, gnl|bosTau2|chr5 (19497748-19497880)
               

               
               1-133, gnl|Hg17|chr12 (50736081-50736213)
               

               
               1-133, gnl|Mm7|chr15 (101257580-101257712)
               


               
               279-487, gnl|bosTau2|chr5 (19498680-19498888)
               

               
               279-487, gnl|Hg17|chr12 (50737103-50737312)
               

               
               279-487, gnl|Mm7|chr15 (101258550-101258766)
               


               
               657-1188, gnl|bosTau2|chr5 (19501039-19501566)
               

               
               657-1188, gnl|Hg17|chr12 (50738735-50739247)
               

               
               657-1188, gnl|Mm7|chr15 (101259832-101260353)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-133, gnl|bosTau2|chr5 (19497748-19497880)
               

               
               1-133, gnl|Hg17|chr12 (50736081-50736213)
               

               
               1-133, gnl|Mm7|chr15 (101257580-101257712)
               


               
               279-487, gnl|bosTau2|chr5 (19498680-19498888)
               

               
               279-487, gnl|Hg17|chr12 (50737103-50737312)
               

               
               279-487, gnl|Mm7|chr15 (101258550-101258766)
               


               
               657-1188, gnl|bosTau2|chr5 (19501039-19501566)
               

               
               657-1188, gnl|Hg17|chr12 (50738735-50739247)
               

               
               657-1188, gnl|Mm7|chr15 (101259832-101260353)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               pla (0.66836)
               

               
               jca (0.22792)
               

               
               nep (0.183925)
               

               
               cag (0.151194)
               

               
               ute (0.132784)
               

               
               cov (0.132153)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.66836)
               

               
               jca (0.22792)
               

               
               nep (0.183925)
               

               
               cag (0.151194)
               

               
               ute (0.132784)
               

               
               cov (0.132153)

	1-133, + strand, RNAz p=0.922861
	736-895, - strand, RNAz p=0.884466
	1015-1188, - strand, RNAz p=0.999758

	1-133, gnl\|bosTau2\|chr5 (19497748-19497880)
	1-133, gnl\|Hg17\|chr12 (50736081-50736213)
	1-133, gnl\|Mm7\|chr15 (101257580-101257712)

	279-487, gnl\|bosTau2\|chr5 (19498680-19498888)
	279-487, gnl\|Hg17\|chr12 (50737103-50737312)
	279-487, gnl\|Mm7\|chr15 (101258550-101258766)

	657-1188, gnl\|bosTau2\|chr5 (19501039-19501566)
	657-1188, gnl\|Hg17\|chr12 (50738735-50739247)
	657-1188, gnl\|Mm7\|chr15 (101259832-101260353)

	pla (0.66836)
	jca (0.22792)
	nep (0.183925)
	cag (0.151194)
	ute (0.132784)
	cov (0.132153)