Non-Coding RNA Search

Ss1.1-rjca05c_b21.5

Sequence:


               
               TCCCTAGACGTGGATTGTGAAGTGAAAAGGAATGAACCAACCAACCTGTCATCTTCTCAC
CCCACCCTCATCGCATTCCGCTATAGTGAAAGGACAAGCCATTCTTGGACATGTTGGCAG
CAGCCGCTGATCTCCCAGCCGACGGGCTGAGCACTGGAACTCTGTGGCTGCACTGGCCCC
AGTCTGTAACGGGGTCGACTGTGCCAGCTGGGCCAGATGCTCTGCTTCTGGCCTAGGACT
TAGCTTCCCAATGATCACCTGCACCAACGAGGCAGAGGTGCTGGTGCTTGCCCCCTCCCC
CTTTTTGTATTTATGTGTGCGTGCGTGCGTGCGTGCGTGTGTGTACACACGAATGTATGT
TTGGTCTGGACCAGCTCCTCCCAGCCCCTGGCCTTTACTTTCTTCCTTGCCTATCCAGGG
CAACAAAAATGTGAAATTCTGCCCTCAGCTAAGCTGAGTAAGGGCCCCTGGGGCTGGCTG
GAGATGGCTGTGGCATCTGTCTGTCCATGGCCCCTCCTCAAGGGAGTGCTGGCAAAGCTG
CAGTGATGAGATGCTCGTGAGTTGACGCCACCTCTCTGCCCTCTCTTGAAGGAGAAGATG
GGGTGACGTGGGCGTGTGCCCATACAGCTCTAGGCACAGAAGCCTTGTGGACAGTATTAG
AGGGTGTGGTGGAGGGTATGGGTGGGGAAGACCCCTGAAGGGGCATCTAATGATGGAAGC
AGGCAGAGCCTGGTGGGTGATTCTCTCAACAGAAAATTGCAATCATGCAGGGCTGGGAGG
GTTAGGATGAACTGGGGCCACTGGAGGCCAGGGACAGGTTTAGATACGCCCCCTGGTCTG
GGAGTGGGAGGGGCTGATTCGGGGTGGGGGGTGGGGGGACTGGAGGGCAACACTGAAGGG
GTTAAACAGGCTTTTGCTCCTCATGAATTTGTTTGCCTGGGCCCAGGATTGGAGGGCTTC
ACACTTGTACCCTGTGTATACAAGAATCAGATTTATAATACTTCCTTGTTTTTTTTGTTA
CGTATGAACGCTATAAACCAAATTATTTTGAAAACTGGTGCATCACCTTGTCCTTAGCAA
TAAAATGTGTTGAGCAGAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCCTAGACGTGGATTGTGAAGTGAAAAGGAATGAACCAACCAACCTGTCATCTTCTCAC
CCCACCCTCATCGCATTCCGCTATAGTGAAAGGACAAGCCATTCTTGGACATGTTGGCAG
CAGCCGCTGATCTCCCAGCCGACGGGCTGAGCACTGGAACTCTGTGGCTGCACTGGCCCC
AGTCTGTAACGGGGTCGACTGTGCCAGCTGGGCCAGATGCTCTGCTTCTGGCCTAGGACT
TAGCTTCCCAATGATCACCTGCACCAACGAGGCAGAGGTGCTGGTGCTTGCCCCCTCCCC
CTTTTTGTATTTATGTGTGCGTGCGTGCGTGCGTGCGTGTGTGTACACACGAATGTATGT
TTGGTCTGGACCAGCTCCTCCCAGCCCCTGGCCTTTACTTTCTTCCTTGCCTATCCAGGG
CAACAAAAATGTGAAATTCTGCCCTCAGCTAAGCTGAGTAAGGGCCCCTGGGGCTGGCTG
GAGATGGCTGTGGCATCTGTCTGTCCATGGCCCCTCCTCAAGGGAGTGCTGGCAAAGCTG
CAGTGATGAGATGCTCGTGAGTTGACGCCACCTCTCTGCCCTCTCTTGAAGGAGAAGATG
GGGTGACGTGGGCGTGTGCCCATACAGCTCTAGGCACAGAAGCCTTGTGGACAGTATTAG
AGGGTGTGGTGGAGGGTATGGGTGGGGAAGACCCCTGAAGGGGCATCTAATGATGGAAGC
AGGCAGAGCCTGGTGGGTGATTCTCTCAACAGAAAATTGCAATCATGCAGGGCTGGGAGG
GTTAGGATGAACTGGGGCCACTGGAGGCCAGGGACAGGTTTAGATACGCCCCCTGGTCTG
GGAGTGGGAGGGGCTGATTCGGGGTGGGGGGTGGGGGGACTGGAGGGCAACACTGAAGGG
GTTAAACAGGCTTTTGCTCCTCATGAATTTGTTTGCCTGGGCCCAGGATTGGAGGGCTTC
ACACTTGTACCCTGTGTATACAAGAATCAGATTTATAATACTTCCTTGTTTTTTTTGTTA
CGTATGAACGCTATAAACCAAATTATTTTGAAAACTGGTGCATCACCTTGTCCTTAGCAA
TAAAATGTGTTGAGCAGAAAAAAA

Predicted RNA structure(s): 4 entry(ies)

More info

Predicted RNA structure(s): 4 entry(ies)

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               339-469, - strand, RNAz p=0.915969
               

               
               378-473, - strand, RNAz p=0.857053
               

               
               561-899, - strand, RNAz p=0.889693
               

               
               659-849, - strand, RNAz p=0.994719

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               339-469, - strand, RNAz p=0.915969
               

               
               378-473, - strand, RNAz p=0.857053
               

               
               561-899, - strand, RNAz p=0.889693
               

               
               659-849, - strand, RNAz p=0.994719

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-1098, gnl|bosTau2|chr3 (71275127-71274020)
               

               
               1-1098, gnl|canFam2|chr15 (19530064-19529053)
               

               
               1-1098, gnl|echTel1|scaffold_200510 (4232-5177)
               

               
               1-1098, gnl|hg17|chr1 (43839194-43840157)
               

               
               1-1098, gnl|Hg17|chr1 (43839219-43840279)
               

               
               1-1098, gnl|loxAfr1|scaffold_1389 (111108-112072)
               

               
               1-1098, gnl|mm7|chr4 (117514610-117513521)
               

               
               1-1098, gnl|Mm7|chr4 (117514581-117513397)
               

               
               1-1098, gnl|monDom2|scaffold_70 (9110788-9109902)
               

               
               1-1098, gnl|oryCun1|scaffold_143437 (3939-2964)
               

               
               1-1098, gnl|panTro1|chr1 (44820739-44821708)
               

               
               1-1098, gnl|rheMac2|chr1 (46617899-46618873)
               

               
               1-1098, gnl|rn3|chr5 (138608168-138607095)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1098, gnl|bosTau2|chr3 (71275127-71274020)
               

               
               1-1098, gnl|canFam2|chr15 (19530064-19529053)
               

               
               1-1098, gnl|echTel1|scaffold_200510 (4232-5177)
               

               
               1-1098, gnl|hg17|chr1 (43839194-43840157)
               

               
               1-1098, gnl|Hg17|chr1 (43839219-43840279)
               

               
               1-1098, gnl|loxAfr1|scaffold_1389 (111108-112072)
               

               
               1-1098, gnl|mm7|chr4 (117514610-117513521)
               

               
               1-1098, gnl|Mm7|chr4 (117514581-117513397)
               

               
               1-1098, gnl|monDom2|scaffold_70 (9110788-9109902)
               

               
               1-1098, gnl|oryCun1|scaffold_143437 (3939-2964)
               

               
               1-1098, gnl|panTro1|chr1 (44820739-44821708)
               

               
               1-1098, gnl|rheMac2|chr1 (46617899-46618873)
               

               
               1-1098, gnl|rn3|chr5 (138608168-138607095)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

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               cga (0.279096)
               

               
               hlv (0.278513)
               

               
               nep (0.183925)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (0.279096)
               

               
               hlv (0.278513)
               

               
               nep (0.183925)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)

	339-469, - strand, RNAz p=0.915969
	378-473, - strand, RNAz p=0.857053
	561-899, - strand, RNAz p=0.889693
	659-849, - strand, RNAz p=0.994719

	1-1098, gnl\|bosTau2\|chr3 (71275127-71274020)
	1-1098, gnl\|canFam2\|chr15 (19530064-19529053)
	1-1098, gnl\|echTel1\|scaffold_200510 (4232-5177)
	1-1098, gnl\|hg17\|chr1 (43839194-43840157)
	1-1098, gnl\|Hg17\|chr1 (43839219-43840279)
	1-1098, gnl\|loxAfr1\|scaffold_1389 (111108-112072)
	1-1098, gnl\|mm7\|chr4 (117514610-117513521)
	1-1098, gnl\|Mm7\|chr4 (117514581-117513397)
	1-1098, gnl\|monDom2\|scaffold_70 (9110788-9109902)
	1-1098, gnl\|oryCun1\|scaffold_143437 (3939-2964)
	1-1098, gnl\|panTro1\|chr1 (44820739-44821708)
	1-1098, gnl\|rheMac2\|chr1 (46617899-46618873)
	1-1098, gnl\|rn3\|chr5 (138608168-138607095)

	cga (0.279096)
	hlv (0.278513)
	nep (0.183925)
	pla (0.133672)
	cov (0.132153)
	ebs (0.118301)
	jca (0.11396)