Ss1.1-rjca05c_c6.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACTTTATGCTTTGATTCTGAACAACAACAAGTTAACAAAGATTCACCCAAAGGCATTTCT AACCACAAAGAAGTTGCGAAGGCTTTATCTGTCCCACAATCAACTAAGTGAAATACCACT TAATCTTCCCAAATCATTAGCAGAACTCAGAATTCATGAAAATAAAGTTAAGAAAATACA AAAGGAGACATTCAAAGGAATGAATGCTTTACATGTTCTAGAAATGAGTGCAAACCCTCT TGATAACAATGGGATTGAACCAGGGGCATTTGAAGGGGTAACAGTGTTCCATATCAGAAT TGCAGAAGCAAAACTGACCTCAATTCCTAAAGAACTACCTTCAACTTTGTTGGAGCTACA TTTAGATTATAATAAAATTTCAACTGTGGAACTGGAGGATTTTAAACGATACAAAGAACT GCAAAGGCTAGGTCTAGGAAACAACAGAATCACAGATATCGAAAATGGAAGTCTTGCTAA CATACCACGAGTGAGAGAAATACACTTGGAAAACAATAAACTAAAAAAAATCCCTTCAGG ACTGCAAGAGTTGAAATACCTACAGATAATCTTCCTTCATTCTAATTCAATTACGAAAGT GGGAGTGAATGACTTCTGCCCAACAGTGCCAAAGATGAAGAAGTCTTTATACAGTGCAAT AAGTTTATTCAACAACCCGGTGAAGTACTGGGAAGTACAACCTGCAACATTCCGTTGTGT TTTGGGCAGAATGAGTGTTCAGCTTGGAAACTTCAGAAAGTAATAATTAGTAATTAGTGA TAGCCATTTAACATAAAATTCAAAAATTGTTACATTTGGAATACTTGAACTCTATTAATA ATGGTGGTATTATACATATAAGCAATAATCTATTCCCATGTGGTAAGGACATTGATTTAC CGTACGACAAAAAATTTCAACAGAATTTTGCAAAAACGATTGATACATCAGGATTAAGAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACTTTATGCTTTGATTCTGAACAACAACAAGTTAACAAAGATTCACCCAAAGGCATTTCT AACCACAAAGAAGTTGCGAAGGCTTTATCTGTCCCACAATCAACTAAGTGAAATACCACT TAATCTTCCCAAATCATTAGCAGAACTCAGAATTCATGAAAATAAAGTTAAGAAAATACA AAAGGAGACATTCAAAGGAATGAATGCTTTACATGTTCTAGAAATGAGTGCAAACCCTCT TGATAACAATGGGATTGAACCAGGGGCATTTGAAGGGGTAACAGTGTTCCATATCAGAAT TGCAGAAGCAAAACTGACCTCAATTCCTAAAGAACTACCTTCAACTTTGTTGGAGCTACA TTTAGATTATAATAAAATTTCAACTGTGGAACTGGAGGATTTTAAACGATACAAAGAACT GCAAAGGCTAGGTCTAGGAAACAACAGAATCACAGATATCGAAAATGGAAGTCTTGCTAA CATACCACGAGTGAGAGAAATACACTTGGAAAACAATAAACTAAAAAAAATCCCTTCAGG ACTGCAAGAGTTGAAATACCTACAGATAATCTTCCTTCATTCTAATTCAATTACGAAAGT GGGAGTGAATGACTTCTGCCCAACAGTGCCAAAGATGAAGAAGTCTTTATACAGTGCAAT AAGTTTATTCAACAACCCGGTGAAGTACTGGGAAGTACAACCTGCAACATTCCGTTGTGT TTTGGGCAGAATGAGTGTTCAGCTTGGAAACTTCAGAAAGTAATAATTAGTAATTAGTGA TAGCCATTTAACATAAAATTCAAAAATTGTTACATTTGGAATACTTGAACTCTATTAATA ATGGTGGTATTATACATATAAGCAATAATCTATTCCCATGTGGTAAGGACATTGATTTAC CGTACGACAAAAAATTTCAACAGAATTTTGCAAAAACGATTGATACATCAGGATTAAGAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 84-221, - strand, RNAz p=0.873624 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 84-221, - strand, RNAz p=0.873624 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 5-221, gnl|bosTau2|chr7 (51796650-51796434) | |
| 5-221, gnl|canFam2|chr1 (101964958-101964701) | |
| 5-221, gnl|danRer3|chr6 (30589156-30589395) | |
| 5-221, gnl|dasNov1|scaffold_159611 (4818-5010) | |
| 5-221, gnl|echTel1|scaffold_122755 (653-404) | |
| 5-221, gnl|fr1|chrUn (232084246-232084482) | |
| 5-221, gnl|galGal2|chr12 (3457594-3457346) | |
| 5-221, gnl|hg17|chr9 (92308186-92308443) | |
| 5-221, gnl|Hg17|chr9 (92308411-92308195) | |
| 5-221, gnl|loxAfr1|scaffold_24476 (40037-40292) | |
| 5-221, gnl|mm7|chr13 (49041348-49041091) | |
| 5-221, gnl|Mm7|chr13 (49041121-49041337) | |
| 5-221, gnl|monDom2|scaffold_427 (38804-39046) | |
| 5-221, gnl|oryCun1|scaffold_178336 (43776-43979) | |
| 5-221, gnl|panTro1|chrUn_random (27864495-27864752) | |
| 5-221, gnl|rheMac2|chr15 (104363361-104363618) | |
| 5-221, gnl|rn3|chr17 (21045432-21045684) | |
| 5-221, gnl|tetNig1|chrUn_random (12209689-12209925) | |
| 5-221, gnl|xenTro1|scaffold_425 (391493-391722) | |
| 562-957, gnl|bosTau2|chr7 (51786590-51786195) | |
| 562-957, gnl|Hg17|chr9 (92299326-92298932) | |
| 562-957, gnl|Mm7|chr13 (49050307-49050666) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 5-221, gnl|bosTau2|chr7 (51796650-51796434) | |
| 5-221, gnl|canFam2|chr1 (101964958-101964701) | |
| 5-221, gnl|danRer3|chr6 (30589156-30589395) | |
| 5-221, gnl|dasNov1|scaffold_159611 (4818-5010) | |
| 5-221, gnl|echTel1|scaffold_122755 (653-404) | |
| 5-221, gnl|fr1|chrUn (232084246-232084482) | |
| 5-221, gnl|galGal2|chr12 (3457594-3457346) | |
| 5-221, gnl|hg17|chr9 (92308186-92308443) | |
| 5-221, gnl|Hg17|chr9 (92308411-92308195) | |
| 5-221, gnl|loxAfr1|scaffold_24476 (40037-40292) | |
| 5-221, gnl|mm7|chr13 (49041348-49041091) | |
| 5-221, gnl|Mm7|chr13 (49041121-49041337) | |
| 5-221, gnl|monDom2|scaffold_427 (38804-39046) | |
| 5-221, gnl|oryCun1|scaffold_178336 (43776-43979) | |
| 5-221, gnl|panTro1|chrUn_random (27864495-27864752) | |
| 5-221, gnl|rheMac2|chr15 (104363361-104363618) | |
| 5-221, gnl|rn3|chr17 (21045432-21045684) | |
| 5-221, gnl|tetNig1|chrUn_random (12209689-12209925) | |
| 5-221, gnl|xenTro1|scaffold_425 (391493-391722) | |
| 562-957, gnl|bosTau2|chr7 (51786590-51786195) | |
| 562-957, gnl|Hg17|chr9 (92299326-92298932) | |
| 562-957, gnl|Mm7|chr13 (49050307-49050666) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| eru (0.240096) | |
| mgm (0.180343) | |
| fat (0.147427) | |
| csk (0.140746) | |
| jca (0.11396) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eru (0.240096) | |
| mgm (0.180343) | |
| fat (0.147427) | |
| csk (0.140746) | |
| jca (0.11396) |