Non-Coding RNA Search

Ss1.1-rjca05c_e4.5

Sequence:


               
               ACCATCTTCAGAGGAGCCCCAGGGAGGGGGTTCCATAAGGGGATGCCCTTCCCTCCTCCC
TCCCCGCAGGAAGATGAGAGCACCAGCATGTAGCACCAAGTTCCCCTGGAGATGGAGAGT
GTGTGGAGGGGGGAGCTCCTGGGTGGGAAGGGGGTGGGGGCGGGGGGCCAAGCTCATCCA
GCCCTTGCCTCTGAAGGAGGGGGCTTCCTGGGGCCCACCTGGCCACTACTCTCTTGTTTC
CTTGCCCTGTGGATTTCCAAGGCCGCCCGGCCTGCCCTGTCCTCTCCCAGGGTGGGAACT
TAGGAGGGGGTATGGGATGGGAGGGGGTTACAAAGGGTTTACATTCTCCACCAAGCAGTA
GCACCAACGTTGATGAGGTCGTGAGTCAGGGGTCCTGGGAAGCTCACTTTCTCTTCCGGC
CACAGGATTTCCCCAGGCAGGCCCCACCTTGGTATCCCAGGGCTCCCAGGGCCCCTCCGA
AGGGCTTGGGAGGTTTGCCACCAATTCCCAGGCCCCCAGCGCCGCCACCTGGGAAAATAG
GAGACAGTCCAAAGCCAGGCCTTGGTGCGACTCCTCCAAGTGGGAATGGCCTGGTGACTC
CTAGGACACCTCCGAGGCCAGCGGCACCATATTTGGCTGCTTTAGCAGCGGCAGCCGGGG
ACACACCTCCAAAGGCTCCAGCCCCTGGAACAGCTCCAAGGCCCCCAACTCCCAGTCCTC
CGACTCCCCCGACGCCAAACTGGGCAGCTTTGGCAGCGGCTTTGGCGGCAGCAGGTCCGA
CTCCTGCCACACCACCTGGGATACCAGCTCCGCCAAGATCTCCAACCCCTCCAAGGGCCC
CGGCCGCCCCATATTTGGCTGCTTTAGCTGCGGCCAGGGGTCCAGGTACTGCACCTGCCC
CAAAGCCAGGAACACCAGCACCAACTCCAAATCCAGGAACGCCGGCACCAACTCCAAATC
CGGGAACGCCGGCAGGAAGCCCAGCAGCAGCCTGGAACTGGGCTTTGGCGGCTGCCTTAT
CAGCAGATTTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCATCTTCAGAGGAGCCCCAGGGAGGGGGTTCCATAAGGGGATGCCCTTCCCTCCTCCC
TCCCCGCAGGAAGATGAGAGCACCAGCATGTAGCACCAAGTTCCCCTGGAGATGGAGAGT
GTGTGGAGGGGGGAGCTCCTGGGTGGGAAGGGGGTGGGGGCGGGGGGCCAAGCTCATCCA
GCCCTTGCCTCTGAAGGAGGGGGCTTCCTGGGGCCCACCTGGCCACTACTCTCTTGTTTC
CTTGCCCTGTGGATTTCCAAGGCCGCCCGGCCTGCCCTGTCCTCTCCCAGGGTGGGAACT
TAGGAGGGGGTATGGGATGGGAGGGGGTTACAAAGGGTTTACATTCTCCACCAAGCAGTA
GCACCAACGTTGATGAGGTCGTGAGTCAGGGGTCCTGGGAAGCTCACTTTCTCTTCCGGC
CACAGGATTTCCCCAGGCAGGCCCCACCTTGGTATCCCAGGGCTCCCAGGGCCCCTCCGA
AGGGCTTGGGAGGTTTGCCACCAATTCCCAGGCCCCCAGCGCCGCCACCTGGGAAAATAG
GAGACAGTCCAAAGCCAGGCCTTGGTGCGACTCCTCCAAGTGGGAATGGCCTGGTGACTC
CTAGGACACCTCCGAGGCCAGCGGCACCATATTTGGCTGCTTTAGCAGCGGCAGCCGGGG
ACACACCTCCAAAGGCTCCAGCCCCTGGAACAGCTCCAAGGCCCCCAACTCCCAGTCCTC
CGACTCCCCCGACGCCAAACTGGGCAGCTTTGGCAGCGGCTTTGGCGGCAGCAGGTCCGA
CTCCTGCCACACCACCTGGGATACCAGCTCCGCCAAGATCTCCAACCCCTCCAAGGGCCC
CGGCCGCCCCATATTTGGCTGCTTTAGCTGCGGCCAGGGGTCCAGGTACTGCACCTGCCC
CAAAGCCAGGAACACCAGCACCAACTCCAAATCCAGGAACGCCGGCACCAACTCCAAATC
CGGGAACGCCGGCAGGAAGCCCAGCAGCAGCCTGGAACTGGGCTTTGGCGGCTGCCTTAT
CAGCAGATTTGG

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               1-153, - strand, RNAz p=0.873278
               

               
               194-348, - strand, RNAz p=0.932431
               

               
               240-356, - strand, RNAz p=0.971252

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-153, - strand, RNAz p=0.873278
               

               
               194-348, - strand, RNAz p=0.932431
               

               
               240-356, - strand, RNAz p=0.971252

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC035570, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC035570, -

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               1-453, gnl|bosTau2|chr25 (29157402-29157860)
               

               
               1-453, gnl|canFam2|chr6 (9302065-9301686)
               

               
               1-453, gnl|hg17|chr7 (72927577-72927954)
               

               
               1-453, gnl|Hg17|chr7 (72928075-72927632)
               

               
               1-453, gnl|loxAfr1|scaffold_181301 (357-719)
               

               
               1-453, gnl|mm7|chr5 (133675168-133674802)
               

               
               1-453, gnl|Mm7|chr5 (133674675-133675110)
               

               
               1-453, gnl|monDom2|scaffold_77 (6717467-6717873)
               

               
               1-453, gnl|panTro1|chr6_random (54198777-54199154)
               

               
               1-453, gnl|rn3|chr12 (22934818-22935167)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-453, gnl|bosTau2|chr25 (29157402-29157860)
               

               
               1-453, gnl|canFam2|chr6 (9302065-9301686)
               

               
               1-453, gnl|hg17|chr7 (72927577-72927954)
               

               
               1-453, gnl|Hg17|chr7 (72928075-72927632)
               

               
               1-453, gnl|loxAfr1|scaffold_181301 (357-719)
               

               
               1-453, gnl|mm7|chr5 (133675168-133674802)
               

               
               1-453, gnl|Mm7|chr5 (133674675-133675110)
               

               
               1-453, gnl|monDom2|scaffold_77 (6717467-6717873)
               

               
               1-453, gnl|panTro1|chr6_random (54198777-54199154)
               

               
               1-453, gnl|rn3|chr12 (22934818-22935167)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               jca (0.683761)
               

               
               nlu (0.575043)
               

               
               nep (0.551775)
               

               
               eru (0.480192)
               

               
               pla (0.401016)
               

               
               med (0.232504)
               

               
               nco (0.161734)
               

               
               nmm (0.132802)
               

               
               ebs (0.118301)

Expressed library(ies): 9 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.683761)
               

               
               nlu (0.575043)
               

               
               nep (0.551775)
               

               
               eru (0.480192)
               

               
               pla (0.401016)
               

               
               med (0.232504)
               

               
               nco (0.161734)
               

               
               nmm (0.132802)
               

               
               ebs (0.118301)

	1-153, - strand, RNAz p=0.873278
	194-348, - strand, RNAz p=0.932431
	240-356, - strand, RNAz p=0.971252

	1-453, gnl\|bosTau2\|chr25 (29157402-29157860)
	1-453, gnl\|canFam2\|chr6 (9302065-9301686)
	1-453, gnl\|hg17\|chr7 (72927577-72927954)
	1-453, gnl\|Hg17\|chr7 (72928075-72927632)
	1-453, gnl\|loxAfr1\|scaffold_181301 (357-719)
	1-453, gnl\|mm7\|chr5 (133675168-133674802)
	1-453, gnl\|Mm7\|chr5 (133674675-133675110)
	1-453, gnl\|monDom2\|scaffold_77 (6717467-6717873)
	1-453, gnl\|panTro1\|chr6_random (54198777-54199154)
	1-453, gnl\|rn3\|chr12 (22934818-22935167)

	jca (0.683761)
	nlu (0.575043)
	nep (0.551775)
	eru (0.480192)
	pla (0.401016)
	med (0.232504)
	nco (0.161734)
	nmm (0.132802)
	ebs (0.118301)