Non-Coding RNA Search

Ss1.1-rjca05c_k21.5

Sequence:


               
               TTGGTTCATAAATACTACTGAGTGACATTAGACTTTAATAACAAATTTAGCTTTTTAAAA
AGAATTGTTGACAGTGGTGGTTAAAAAAACAGGTACCATATTCAATGCTTTTGCACCAAG
TGTTTGACAGGTTGTCTATTTTTTAATACACATCGGCTATGAACCACATTTGTTCTAATA
TTTCAAATTATATATTGTGGAAAATATTTCTTGAATGTGTGAGGCTTAAATTTTTTCCTC
TTTCAATATGATTTTTATTCTTGTGTCTTATTTGGTTTTTGCATTGATAGCAAAGTGATA
ATTTATAATACTAGCCAAAATTGACTTCTCTTTCAAACCAGATCCATGTATACATGGGGC
TTGTTGCTTCTCTGGGTAAATGCTTTATCTGTGAATTTTCAGACAAAATGGGCAACTGGC
AATGCTCATAACATATTCCAATTTTTATTGGAATTTTCCATGGAATGTTATTATTACATT
AAAGCTATGTAAGGTGAAGCTTTGATAATTTTTTACTTTTAAAATTATGATAAATTCTAA
TCTAATATTAAAAAAAATTTTTGTACTCCACATGAAAAATGCTAAATTATAGTGCAGGCA
TTTAGGAAAGTATTGAGGGATTGAATTCCTTAAGAATTTCTTTTCTAGTTCTGAGTCATA
AATACTCAATTGACTTAAATTTCTAAAATTGTAAACTGAGTCTTTTTATTGTAAATCTAC
CATAGTAAAGCCTTTGGAATTTTTTTTCTGCTTTTTCCTTGTTACAACTCATTTAAAAAC
CGAATTAGTTTTCTTAGGTGACATAAACCTGTCTCTTGAGAAATAAATAAAACACTCTTG
TGTTTCCAGTGGCTGTAGGACCTGAAATGTGTTTCCTAGAGACGGAAACACATTCTGTTG
AAGTTAACTTTTCTTTGTCACAATTTTGGATAATAAACATCTAAAAGTATTAATGTTTAA
AGACTTATATTCTCTACTGGGGCCCTTAAAATTTAGATGGAAGAAATCCAACCAGAATAT
TTATATTAGAGTATAATCTCATCTGGTAGGATGAACTAGCTGACCATGGATACGTTTTTG
TGATTTTTTTCCCCCCAAGTTGTCTTTTCTAACTTTAAATGTGTTCTGAGATATGCGAAC
ATTAATTGTAATGTCAACTATTATACAACTGTCTTTGCAACTTTATAGGCAGGTGAATTT
TGCTGTTACTAATGGCCATTCATTTATAATCTCTGAAATAGCATTTGTGGCATTTAATGA
CAAAAGTTAAAATGTCCATTATGGATGTTAATTCTGAAGAGCCAAATTACATGTTATTTA
AATTTTTCTGGGCATCTGAAAAACTCATCTGCTAAACAACGTAAGTTTCCTCAGCGTCAT
CTAGGATTATGAAATTGTTGCAGATGTTTTCAAAATTGAAGGAGAAAGGGGAAAAAAAAT
CATTACACAATGATCAGACTTTTCTAATGAAACAGCCAAGAAAATAAAATCCTTCCATAT
TTCAAAAACTGATGAAGTCTTTTCAGACATATCTGAACTTTGAGAATTTCCTCAATCATC
TAAATGCCCTAGAGATTTTGGTTCTCTCTGTTCACAACCAGTTGTATAACAAATGCTCAG
TAGTGTTTTCCTCCCTGTGTGTGAAGTAATGAATCATTGGTTATGTGACTTGTTATGTAT
TCTATTAAACACTAAAGAATAAAACATTCACTCCTTTGATTATTCCTCAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGGTTCATAAATACTACTGAGTGACATTAGACTTTAATAACAAATTTAGCTTTTTAAAA
AGAATTGTTGACAGTGGTGGTTAAAAAAACAGGTACCATATTCAATGCTTTTGCACCAAG
TGTTTGACAGGTTGTCTATTTTTTAATACACATCGGCTATGAACCACATTTGTTCTAATA
TTTCAAATTATATATTGTGGAAAATATTTCTTGAATGTGTGAGGCTTAAATTTTTTCCTC
TTTCAATATGATTTTTATTCTTGTGTCTTATTTGGTTTTTGCATTGATAGCAAAGTGATA
ATTTATAATACTAGCCAAAATTGACTTCTCTTTCAAACCAGATCCATGTATACATGGGGC
TTGTTGCTTCTCTGGGTAAATGCTTTATCTGTGAATTTTCAGACAAAATGGGCAACTGGC
AATGCTCATAACATATTCCAATTTTTATTGGAATTTTCCATGGAATGTTATTATTACATT
AAAGCTATGTAAGGTGAAGCTTTGATAATTTTTTACTTTTAAAATTATGATAAATTCTAA
TCTAATATTAAAAAAAATTTTTGTACTCCACATGAAAAATGCTAAATTATAGTGCAGGCA
TTTAGGAAAGTATTGAGGGATTGAATTCCTTAAGAATTTCTTTTCTAGTTCTGAGTCATA
AATACTCAATTGACTTAAATTTCTAAAATTGTAAACTGAGTCTTTTTATTGTAAATCTAC
CATAGTAAAGCCTTTGGAATTTTTTTTCTGCTTTTTCCTTGTTACAACTCATTTAAAAAC
CGAATTAGTTTTCTTAGGTGACATAAACCTGTCTCTTGAGAAATAAATAAAACACTCTTG
TGTTTCCAGTGGCTGTAGGACCTGAAATGTGTTTCCTAGAGACGGAAACACATTCTGTTG
AAGTTAACTTTTCTTTGTCACAATTTTGGATAATAAACATCTAAAAGTATTAATGTTTAA
AGACTTATATTCTCTACTGGGGCCCTTAAAATTTAGATGGAAGAAATCCAACCAGAATAT
TTATATTAGAGTATAATCTCATCTGGTAGGATGAACTAGCTGACCATGGATACGTTTTTG
TGATTTTTTTCCCCCCAAGTTGTCTTTTCTAACTTTAAATGTGTTCTGAGATATGCGAAC
ATTAATTGTAATGTCAACTATTATACAACTGTCTTTGCAACTTTATAGGCAGGTGAATTT
TGCTGTTACTAATGGCCATTCATTTATAATCTCTGAAATAGCATTTGTGGCATTTAATGA
CAAAAGTTAAAATGTCCATTATGGATGTTAATTCTGAAGAGCCAAATTACATGTTATTTA
AATTTTTCTGGGCATCTGAAAAACTCATCTGCTAAACAACGTAAGTTTCCTCAGCGTCAT
CTAGGATTATGAAATTGTTGCAGATGTTTTCAAAATTGAAGGAGAAAGGGGAAAAAAAAT
CATTACACAATGATCAGACTTTTCTAATGAAACAGCCAAGAAAATAAAATCCTTCCATAT
TTCAAAAACTGATGAAGTCTTTTCAGACATATCTGAACTTTGAGAATTTCCTCAATCATC
TAAATGCCCTAGAGATTTTGGTTCTCTCTGTTCACAACCAGTTGTATAACAAATGCTCAG
TAGTGTTTTCCTCCCTGTGTGTGAAGTAATGAATCATTGGTTATGTGACTTGTTATGTAT
TCTATTAAACACTAAAGAATAAAACATTCACTCCTTTGATTATTCCTCAAAAAAAAAAAA
AAAAAAAAAAAA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               30-1408, gnl|bosTau2|chr12 (27592607-27594016)
               

               
               30-1408, gnl|Hg17|chr13 (76354038-76352651)
               

               
               30-1408, gnl|Mm7|chr14 (97409090-97407707)
               


               
               1415-1728, gnl|bosTau2|chr12 (27594058-27594383)
               

               
               1415-1728, gnl|Hg17|chr13 (76352618-76352302)
               

               
               1415-1728, gnl|Mm7|chr14 (97407670-97407353)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               30-1408, gnl|bosTau2|chr12 (27592607-27594016)
               

               
               30-1408, gnl|Hg17|chr13 (76354038-76352651)
               

               
               30-1408, gnl|Mm7|chr14 (97409090-97407707)
               


               
               1415-1728, gnl|bosTau2|chr12 (27594058-27594383)
               

               
               1415-1728, gnl|Hg17|chr13 (76352618-76352302)
               

               
               1415-1728, gnl|Mm7|chr14 (97407670-97407353)

Expressed library(ies): 18 entry(ies)

More info

Expressed library(ies): 18 entry(ies)

Help | Less info


               
               sme (0.610874)
               

               
               spl (0.572738)
               

               
               fce (0.543183)
               

               
               tra (0.492368)
               

               
               mga (0.480615)
               

               
               mgp (0.461361)
               

               
               ecc (0.345105)
               

               
               cty (0.31224)
               

               
               fat (0.294855)
               

               
               kid (0.259471)
               

               
               ret (0.257467)
               

               
               cbl (0.229595)
               

               
               tes (0.207814)
               

               
               lnt (0.142308)
               

               
               nmm (0.132802)
               

               
               sug (0.127291)
               

               
               eep (0.122564)
               

               
               jca (0.11396)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.610874)
               

               
               spl (0.572738)
               

               
               fce (0.543183)
               

               
               tra (0.492368)
               

               
               mga (0.480615)
               

               
               mgp (0.461361)
               

               
               ecc (0.345105)
               

               
               cty (0.31224)
               

               
               fat (0.294855)
               

               
               kid (0.259471)
               

               
               ret (0.257467)
               

               
               cbl (0.229595)
               

               
               tes (0.207814)
               

               
               lnt (0.142308)
               

               
               nmm (0.132802)
               

               
               sug (0.127291)
               

               
               eep (0.122564)
               

               
               jca (0.11396)

	30-1408, gnl\|bosTau2\|chr12 (27592607-27594016)
	30-1408, gnl\|Hg17\|chr13 (76354038-76352651)
	30-1408, gnl\|Mm7\|chr14 (97409090-97407707)

	1415-1728, gnl\|bosTau2\|chr12 (27594058-27594383)
	1415-1728, gnl\|Hg17\|chr13 (76352618-76352302)
	1415-1728, gnl\|Mm7\|chr14 (97407670-97407353)

	sme (0.610874)
	spl (0.572738)
	fce (0.543183)
	tra (0.492368)
	mga (0.480615)
	mgp (0.461361)
	ecc (0.345105)
	cty (0.31224)
	fat (0.294855)
	kid (0.259471)
	ret (0.257467)
	cbl (0.229595)
	tes (0.207814)
	lnt (0.142308)
	nmm (0.132802)
	sug (0.127291)
	eep (0.122564)
	jca (0.11396)