Ss1.1-rjca05c_n7.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCTCCAACAACTTCGATGGCTTCCATGCCATCTTTGAGGAGATCACAGCGTGTTCCTCG TCCCCTTGTTTCCATGATGGCACTTGTCTCCTGGACAGCACCGGTTCATACAGGTGTGCC TGCCTGGCAGGCTTCACCGGGCAGCACTGCGAAAATCTCCTCGAAGAAAGAAACTGCTCA GACCCTGGGGGCCCAGTCAATGGGTACAAGGAGATTACAGGAGGCCCTGGGCTTATCAAT GGGCGCTATGCAAAAATTGGCACCGTCATGTCCTTCTTTTGTAACAACTCCTATGTTCTT AGTGGCAATGAGATGAGAACTTGCCAGCAGAATGGAGAGTGGTCTGGGAAACAGCCCATC TGCATAAAAGCCTGCCGAGAACCAAAGATCTCAGACCTGGTGAGACGGAGAGTTCTTCCC ATGCAGGTTCAGTCAAGGGAGACGCCGTTACACCAGCTGTACTCCTCAGCCTTCAGCAAG CAAAAACTGCAGGACACCCTTACCAAGAAGCCAGCCCTTCCCTTTGGAGACCTGCCCCCT GGGTACCAACATCTGCACACCCAGCTCCAATATGAATGCATCTCCCCCTTCTACCGCCGC CTGGGCAGCAGCCGGAGGACATGTCTGAGGACTGGAAAGTGGAGTGGTCGTGCCCCATCC TGCGTCCCAATTTGCGGGAAAACTGAGAACGTCACTTCCCCAAAGACCCAGGGGACGCGC TGGCCGTGGCAGGCCGCCATCTACAGGAGGGCCAGTGGGGTGCACGGGGGCAGCCTCCAC AAGGATGCGTGGTTCCTGGTCTGCAGCGGCGCCCTGGTCAATGAGCGCACCGTGGTGGCG GCTGCCCACTGCGTCACTGAGCTGGGGAGGGTGACCGTGATCAAGACAGCGGACCTCAAA GTCGTCCTGGGGAAATTCTACCGTGATGACCACCGGGATGAGAAGAGCATCCAGAGCTTG CGGATTTCTGCCATCATCCTGCATCCCAACTATGACCCCATCCTGCTGGATGCCGACATC GCCGTCCTGAAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCTCCAACAACTTCGATGGCTTCCATGCCATCTTTGAGGAGATCACAGCGTGTTCCTCG TCCCCTTGTTTCCATGATGGCACTTGTCTCCTGGACAGCACCGGTTCATACAGGTGTGCC TGCCTGGCAGGCTTCACCGGGCAGCACTGCGAAAATCTCCTCGAAGAAAGAAACTGCTCA GACCCTGGGGGCCCAGTCAATGGGTACAAGGAGATTACAGGAGGCCCTGGGCTTATCAAT GGGCGCTATGCAAAAATTGGCACCGTCATGTCCTTCTTTTGTAACAACTCCTATGTTCTT AGTGGCAATGAGATGAGAACTTGCCAGCAGAATGGAGAGTGGTCTGGGAAACAGCCCATC TGCATAAAAGCCTGCCGAGAACCAAAGATCTCAGACCTGGTGAGACGGAGAGTTCTTCCC ATGCAGGTTCAGTCAAGGGAGACGCCGTTACACCAGCTGTACTCCTCAGCCTTCAGCAAG CAAAAACTGCAGGACACCCTTACCAAGAAGCCAGCCCTTCCCTTTGGAGACCTGCCCCCT GGGTACCAACATCTGCACACCCAGCTCCAATATGAATGCATCTCCCCCTTCTACCGCCGC CTGGGCAGCAGCCGGAGGACATGTCTGAGGACTGGAAAGTGGAGTGGTCGTGCCCCATCC TGCGTCCCAATTTGCGGGAAAACTGAGAACGTCACTTCCCCAAAGACCCAGGGGACGCGC TGGCCGTGGCAGGCCGCCATCTACAGGAGGGCCAGTGGGGTGCACGGGGGCAGCCTCCAC AAGGATGCGTGGTTCCTGGTCTGCAGCGGCGCCCTGGTCAATGAGCGCACCGTGGTGGCG GCTGCCCACTGCGTCACTGAGCTGGGGAGGGTGACCGTGATCAAGACAGCGGACCTCAAA GTCGTCCTGGGGAAATTCTACCGTGATGACCACCGGGATGAGAAGAGCATCCAGAGCTTG CGGATTTCTGCCATCATCCTGCATCCCAACTATGACCCCATCCTGCTGGATGCCGACATC GCCGTCCTGAAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 46-594, - strand, RNAz p=0.703434 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 46-594, - strand, RNAz p=0.703434 |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 46-157, gnl|bosTau2|chr15 (39658562-39658673) | |
| 46-157, gnl|canFam2|chr18 (35541144-35540984) | |
| 46-157, gnl|danRer3|chrUn (183967772-183967601) | |
| 46-157, gnl|dasNov1|scaffold_3322 (61436-61277) | |
| 46-157, gnl|echTel1|scaffold_288519 (2287-2432) | |
| 46-157, gnl|fr1|chrUn (165574979-165574837) | |
| 46-157, gnl|galGal2|chr5 (16126457-16126597) | |
| 46-157, gnl|hg17|chr11 (35446106-35446263) | |
| 46-157, gnl|Hg17|chr11 (35446236-35446125) | |
| 46-157, gnl|loxAfr1|scaffold_225431 (311-151) | |
| 46-157, gnl|mm7|chr2 (102465750-102465595) | |
| 46-157, gnl|Mm7|chr2 (102465619-102465730) | |
| 46-157, gnl|monDom2|scaffold_33 (484627-484786) | |
| 46-157, gnl|oryCun1|scaffold_198673 (124463-124620) | |
| 46-157, gnl|panTro1|chr9 (35874324-35874481) | |
| 46-157, gnl|rheMac2|chr14 (36366890-36366733) | |
| 46-157, gnl|rn3|chr3 (87721855-87721700) | |
| 46-157, gnl|tetNig1|chr13 (5474581-5474723) | |
| 46-157, gnl|xenTro1|scaffold_266 (1210242-1210116) | |
| 158-370, gnl|bosTau2|chr15 (39677138-39677350) | |
| 158-370, gnl|Hg17|chr11 (35419817-35419605) | |
| 158-370, gnl|Mm7|chr2 (102485115-102485327) | |
| 436-668, gnl|bosTau2|chr15 (39682179-39682412) | |
| 436-668, gnl|canFam2|chr18 (35564639-35564362) | |
| 436-668, gnl|danRer3|chrUn (183973283-183973010) | |
| 436-668, gnl|dasNov1|scaffold_3322 (94746-94467) | |
| 436-668, gnl|echTel1|scaffold_302717 (3575-3298) | |
| 436-668, gnl|fr1|chrUn (165579218-165578961) | |
| 436-668, gnl|galGal2|chr5 (16096664-16096943) | |
| 436-668, gnl|hg17|chr11 (35414013-35414293) | |
| 436-668, gnl|Hg17|chr11 (35414261-35414029) | |
| 436-668, gnl|loxAfr1|scaffold_68 (56800-56522) | |
| 436-668, gnl|mm7|chr2 (102490246-102489966) | |
| 436-668, gnl|Mm7|chr2 (102489996-102490228) | |
| 436-668, gnl|monDom2|scaffold_33 (447265-447538) | |
| 436-668, gnl|oryCun1|scaffold_198673 (98472-98748) | |
| 436-668, gnl|panTro1|chr9 (35842305-35842585) | |
| 436-668, gnl|rheMac2|chr14 (36397587-36397307) | |
| 436-668, gnl|rn3|chr3 (87746495-87746215) | |
| 436-668, gnl|tetNig1|chr13 (5470344-5470596) | |
| 436-668, gnl|xenTro1|scaffold_266 (1216021-1215756) | |
| 671-963, gnl|bosTau2|chr15 (39683342-39683634) | |
| 671-963, gnl|Hg17|chr11 (35412928-35412636) | |
| 671-963, gnl|Mm7|chr2 (102491454-102491746) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 46-157, gnl|bosTau2|chr15 (39658562-39658673) | |
| 46-157, gnl|canFam2|chr18 (35541144-35540984) | |
| 46-157, gnl|danRer3|chrUn (183967772-183967601) | |
| 46-157, gnl|dasNov1|scaffold_3322 (61436-61277) | |
| 46-157, gnl|echTel1|scaffold_288519 (2287-2432) | |
| 46-157, gnl|fr1|chrUn (165574979-165574837) | |
| 46-157, gnl|galGal2|chr5 (16126457-16126597) | |
| 46-157, gnl|hg17|chr11 (35446106-35446263) | |
| 46-157, gnl|Hg17|chr11 (35446236-35446125) | |
| 46-157, gnl|loxAfr1|scaffold_225431 (311-151) | |
| 46-157, gnl|mm7|chr2 (102465750-102465595) | |
| 46-157, gnl|Mm7|chr2 (102465619-102465730) | |
| 46-157, gnl|monDom2|scaffold_33 (484627-484786) | |
| 46-157, gnl|oryCun1|scaffold_198673 (124463-124620) | |
| 46-157, gnl|panTro1|chr9 (35874324-35874481) | |
| 46-157, gnl|rheMac2|chr14 (36366890-36366733) | |
| 46-157, gnl|rn3|chr3 (87721855-87721700) | |
| 46-157, gnl|tetNig1|chr13 (5474581-5474723) | |
| 46-157, gnl|xenTro1|scaffold_266 (1210242-1210116) | |
| 158-370, gnl|bosTau2|chr15 (39677138-39677350) | |
| 158-370, gnl|Hg17|chr11 (35419817-35419605) | |
| 158-370, gnl|Mm7|chr2 (102485115-102485327) | |
| 436-668, gnl|bosTau2|chr15 (39682179-39682412) | |
| 436-668, gnl|canFam2|chr18 (35564639-35564362) | |
| 436-668, gnl|danRer3|chrUn (183973283-183973010) | |
| 436-668, gnl|dasNov1|scaffold_3322 (94746-94467) | |
| 436-668, gnl|echTel1|scaffold_302717 (3575-3298) | |
| 436-668, gnl|fr1|chrUn (165579218-165578961) | |
| 436-668, gnl|galGal2|chr5 (16096664-16096943) | |
| 436-668, gnl|hg17|chr11 (35414013-35414293) | |
| 436-668, gnl|Hg17|chr11 (35414261-35414029) | |
| 436-668, gnl|loxAfr1|scaffold_68 (56800-56522) | |
| 436-668, gnl|mm7|chr2 (102490246-102489966) | |
| 436-668, gnl|Mm7|chr2 (102489996-102490228) | |
| 436-668, gnl|monDom2|scaffold_33 (447265-447538) | |
| 436-668, gnl|oryCun1|scaffold_198673 (98472-98748) | |
| 436-668, gnl|panTro1|chr9 (35842305-35842585) | |
| 436-668, gnl|rheMac2|chr14 (36397587-36397307) | |
| 436-668, gnl|rn3|chr3 (87746495-87746215) | |
| 436-668, gnl|tetNig1|chr13 (5470344-5470596) | |
| 436-668, gnl|xenTro1|scaffold_266 (1216021-1215756) | |
| 671-963, gnl|bosTau2|chr15 (39683342-39683634) | |
| 671-963, gnl|Hg17|chr11 (35412928-35412636) | |
| 671-963, gnl|Mm7|chr2 (102491454-102491746) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| jca (0.11396) |