Ss1.1-rjca06c_b8.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGGCAAGAAGAAGTTCCAGAAGGAGATCGAAGCCCTCACCCAGCAGTACGAAGAGAAGG CAGCTGCTTATGACAAACTGGAAAAGACCAAGAACAGGCTTCAGCAGGAGCTGGACGACC TGGTCGTCGATTTGGACAACCAGCGGCAACTGGTGTCCAACCTCTGGGCCTTCTGTGTGT TGCAGTTGTTGGCCGAGGAGAAAAACATCTCTTCCAAGTATGCGGATGAAAGGGACAGAG CTGAGGCGGAAGCCAGGGAAAAGGAAACCAAAGCCCTGTCGCTGGCGCGGGCCCTCGAAG AGGCGTTGGAGGCCAAAGAGGAGCTCGAGAGGACCAACAAAATGCTCAAAGCCGAGATGG AGGATCTGGTCAGCTCCAAGGACGATGTGGGCAAGAACGTCCATGAGCTGGAGAAGTCCA AGCGGGCCCTGGAAACTCAGATGGAGGAGATGAAGACCCAGCTGGAAGAGCTCGAGGACG AGCTGCAGGCGACAGAAGATGCCAAGCTGCGGCTCGAGGTCAACATGCAGGCCCTCAAGG GCCAGTTCGAGCGGGACCTCCAGGCCCGGGATGAGCAGAATGAAGAGAAGAGGCGGCAGC TGCAGAGGCAGCTTCACGAGTACGAGACGGAACTGGAAGACGAGCGAAAGCAGCGCGCCC TGGCAGCGGCGGCCAAGAAGAAGCTGGAAGGAGACCTCAAGGACCTGGAGCTGCAGGCCG ACTCGGCCATCAAGGGGAGGGAGGAAGCCATCAAGCAGCTGAGAAAACTGCAGGCTCAGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGGCAAGAAGAAGTTCCAGAAGGAGATCGAAGCCCTCACCCAGCAGTACGAAGAGAAGG CAGCTGCTTATGACAAACTGGAAAAGACCAAGAACAGGCTTCAGCAGGAGCTGGACGACC TGGTCGTCGATTTGGACAACCAGCGGCAACTGGTGTCCAACCTCTGGGCCTTCTGTGTGT TGCAGTTGTTGGCCGAGGAGAAAAACATCTCTTCCAAGTATGCGGATGAAAGGGACAGAG CTGAGGCGGAAGCCAGGGAAAAGGAAACCAAAGCCCTGTCGCTGGCGCGGGCCCTCGAAG AGGCGTTGGAGGCCAAAGAGGAGCTCGAGAGGACCAACAAAATGCTCAAAGCCGAGATGG AGGATCTGGTCAGCTCCAAGGACGATGTGGGCAAGAACGTCCATGAGCTGGAGAAGTCCA AGCGGGCCCTGGAAACTCAGATGGAGGAGATGAAGACCCAGCTGGAAGAGCTCGAGGACG AGCTGCAGGCGACAGAAGATGCCAAGCTGCGGCTCGAGGTCAACATGCAGGCCCTCAAGG GCCAGTTCGAGCGGGACCTCCAGGCCCGGGATGAGCAGAATGAAGAGAAGAGGCGGCAGC TGCAGAGGCAGCTTCACGAGTACGAGACGGAACTGGAAGACGAGCGAAAGCAGCGCGCCC TGGCAGCGGCGGCCAAGAAGAAGCTGGAAGGAGACCTCAAGGACCTGGAGCTGCAGGCCG ACTCGGCCATCAAGGGGAGGGAGGAAGCCATCAAGCAGCTGAGAAAACTGCAGGCTCAGA |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 41-163, - strand, RNAz p=0.928761 | |
| 399-517, + strand, RNAz p=0.74686 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 41-163, - strand, RNAz p=0.928761 | |
| 399-517, + strand, RNAz p=0.74686 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_017668, - |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 1-163, gnl|bosTau2|chr25 (16268421-16268259) | |
| 1-163, gnl|canFam2|chr6 (31172520-31172293) | |
| 1-163, gnl|danRer3|chr3 (32378714-32378937) | |
| 1-163, gnl|dasNov1|scaffold_3919 (42366-42593) | |
| 1-163, gnl|echTel1|scaffold_294344 (2120-1893) | |
| 1-163, gnl|fr1|chrUn (285973844-285973617) | |
| 1-163, gnl|galGal2|chr14 (9612046-9612273) | |
| 1-163, gnl|hg17|chr16 (15725547-15725774) | |
| 1-163, gnl|Hg17|chr16 (15725709-15725547) | |
| 1-163, gnl|loxAfr1|scaffold_85771 (5710-5937) | |
| 1-163, gnl|mm7|chr16 (13754076-13754303) | |
| 1-163, gnl|Mm7|chr16 (13754238-13754076) | |
| 1-163, gnl|monDom2|scaffold_17 (27550334-27550107) | |
| 1-163, gnl|oryCun1|scaffold_200334 (136590-136363) | |
| 1-163, gnl|panTro1|chr18 (16096446-16096673) | |
| 1-163, gnl|rheMac2|chr20 (15442394-15442621) | |
| 1-163, gnl|rn3|chr10 (763006-762779) | |
| 1-163, gnl|tetNig1|chrUn_random (27307544-27307321) | |
| 1-163, gnl|xenTro1|scaffold_214 (14985-15209) | |
| 399-601, gnl|bosTau2|chr2 (77864278-77864076) | |
| 399-601, gnl|Hg17|chr17 (8334595-8334393) | |
| 399-601, gnl|Mm7|chr11 (68886201-68886403) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-163, gnl|bosTau2|chr25 (16268421-16268259) | |
| 1-163, gnl|canFam2|chr6 (31172520-31172293) | |
| 1-163, gnl|danRer3|chr3 (32378714-32378937) | |
| 1-163, gnl|dasNov1|scaffold_3919 (42366-42593) | |
| 1-163, gnl|echTel1|scaffold_294344 (2120-1893) | |
| 1-163, gnl|fr1|chrUn (285973844-285973617) | |
| 1-163, gnl|galGal2|chr14 (9612046-9612273) | |
| 1-163, gnl|hg17|chr16 (15725547-15725774) | |
| 1-163, gnl|Hg17|chr16 (15725709-15725547) | |
| 1-163, gnl|loxAfr1|scaffold_85771 (5710-5937) | |
| 1-163, gnl|mm7|chr16 (13754076-13754303) | |
| 1-163, gnl|Mm7|chr16 (13754238-13754076) | |
| 1-163, gnl|monDom2|scaffold_17 (27550334-27550107) | |
| 1-163, gnl|oryCun1|scaffold_200334 (136590-136363) | |
| 1-163, gnl|panTro1|chr18 (16096446-16096673) | |
| 1-163, gnl|rheMac2|chr20 (15442394-15442621) | |
| 1-163, gnl|rn3|chr10 (763006-762779) | |
| 1-163, gnl|tetNig1|chrUn_random (27307544-27307321) | |
| 1-163, gnl|xenTro1|scaffold_214 (14985-15209) | |
| 399-601, gnl|bosTau2|chr2 (77864278-77864076) | |
| 399-601, gnl|Hg17|chr17 (8334595-8334393) | |
| 399-601, gnl|Mm7|chr11 (68886201-68886403) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nmm (0.132802) | |
| jca (0.11396) |