Non-Coding RNA Search

Ss1.1-rjca06c_d6.5

Sequence:


               
               GCGGGCTGAGCAGGAAGGAAACCGCTCCCGAGCGCGGCGGCCTCGTCTCCAGGCCGTGCA
GCTGCTGCTACCGCTACCCGTCTGCCTGTCTCTCGGCCTGTCGGTCCACCCGCAGCATGA
GCGGCCTGCGCGTCTACAGCACGTCGGTCACCGGCTCCCGCGAAATCAAGTCCCAGCAGA
GCGAGGTGACCCGCATCCTGGATGGGAAGCGCATCCAGTACCAACTAGTGGACATCTCCC
AGGACAACGCCCTGCGGGATGAGATGCGAGCCTTGGCGGGCAACCCCAAGGCCACCCCAC
CCCAGATTGTCAACGGGGACCAGTACTGTGGGGACTATGAGCTCTTCGTGGAGGCTGTGG
AACAAAACACACTGCAGGAGTTCCTGAAACTGTCCTGAACCAAGCCAGCGCCCGGACTCC
GTCACCACATTCCCCTTAGCAATCACCCAGCCACGAAGGACCTTGTGACCAACCGCCTGG
TATTCTTAACCTTCTGACCTTGGAGCCCCTCCCCCTAACCCATGACCTTTCTCCCCTCTC
CTAACTGTAGCCCCCTCCTCCATTCGAAGGCAACATTCCTTACCCACTAGTCTCGGAAAT
TAACAGCCCAAGTGCTGGCTGTTGTCAGCCAGGTCCTGAGACTGCCACCCTGCCTGGCAC
TGGCTAATGGGCACCTTTGCTGGTTCCATTAGCCAGGGCTCTGCCAAATGCCCCGCAATC
CCCATCTGGGAGCACCGCAGAAACAATTAAATGTCCCATTCCATTGGCAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGGCTGAGCAGGAAGGAAACCGCTCCCGAGCGCGGCGGCCTCGTCTCCAGGCCGTGCA
GCTGCTGCTACCGCTACCCGTCTGCCTGTCTCTCGGCCTGTCGGTCCACCCGCAGCATGA
GCGGCCTGCGCGTCTACAGCACGTCGGTCACCGGCTCCCGCGAAATCAAGTCCCAGCAGA
GCGAGGTGACCCGCATCCTGGATGGGAAGCGCATCCAGTACCAACTAGTGGACATCTCCC
AGGACAACGCCCTGCGGGATGAGATGCGAGCCTTGGCGGGCAACCCCAAGGCCACCCCAC
CCCAGATTGTCAACGGGGACCAGTACTGTGGGGACTATGAGCTCTTCGTGGAGGCTGTGG
AACAAAACACACTGCAGGAGTTCCTGAAACTGTCCTGAACCAAGCCAGCGCCCGGACTCC
GTCACCACATTCCCCTTAGCAATCACCCAGCCACGAAGGACCTTGTGACCAACCGCCTGG
TATTCTTAACCTTCTGACCTTGGAGCCCCTCCCCCTAACCCATGACCTTTCTCCCCTCTC
CTAACTGTAGCCCCCTCCTCCATTCGAAGGCAACATTCCTTACCCACTAGTCTCGGAAAT
TAACAGCCCAAGTGCTGGCTGTTGTCAGCCAGGTCCTGAGACTGCCACCCTGCCTGGCAC
TGGCTAATGGGCACCTTTGCTGGTTCCATTAGCCAGGGCTCTGCCAAATGCCCCGCAATC
CCCATCTGGGAGCACCGCAGAAACAATTAAATGTCCCATTCCATTGGCAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55960190|emb|CAI15827.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55960190|emb|CAI15827.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               406-513, - strand, RNAz p=0.813289
               

               
               550-769, - strand, RNAz p=0.999427

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               406-513, - strand, RNAz p=0.813289
               

               
               550-769, - strand, RNAz p=0.999427

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AK094198, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AK094198, -

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-164, gnl|bosTau2|chr2 (78141478-78141637)
               

               
               1-164, gnl|Hg17|chr1 (26290675-26290836)
               

               
               1-164, gnl|Mm7|chr4 (133507210-133507049)
               


               
               332-769, gnl|bosTau2|chr2 (78142496-78142947)
               

               
               332-769, gnl|Hg17|chr1 (26291690-26292155)
               

               
               332-769, gnl|Mm7|chr4 (133506240-133505843)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-164, gnl|bosTau2|chr2 (78141478-78141637)
               

               
               1-164, gnl|Hg17|chr1 (26290675-26290836)
               

               
               1-164, gnl|Mm7|chr4 (133507210-133507049)
               


               
               332-769, gnl|bosTau2|chr2 (78142496-78142947)
               

               
               332-769, gnl|Hg17|chr1 (26291690-26292155)
               

               
               332-769, gnl|Mm7|chr4 (133506240-133505843)

Expressed library(ies): 45 entry(ies)

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Expressed library(ies): 45 entry(ies)

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               cly (1.32706)
               

               
               ece (1.14653)
               

               
               cga (1.11638)
               

               
               jca (0.911681)
               

               
               cag (0.907167)
               

               
               ton (0.877501)
               

               
               csp (0.805932)
               

               
               cov (0.792917)
               

               
               elu (0.770713)
               

               
               hyp (0.714184)
               

               
               fbs (0.701385)
               

               
               eep (0.61282)
               

               
               ebs (0.591506)
               

               
               lnt (0.569233)
               

               
               eye (0.511509)
               

               
               fhi (0.508733)
               

               
               pla (0.401016)
               

               
               ute (0.398353)
               

               
               col (0.390016)
               

               
               nlu (0.383362)
               

               
               nep (0.36785)
               

               
               clu (0.358938)
               

               
               fty (0.351679)
               

               
               mcp (0.341297)
               

               
               eli (0.303628)
               

               
               nbm (0.297974)
               

               
               pty (0.285429)
               

               
               fce (0.271592)
               

               
               eru (0.240096)
               

               
               med (0.232504)
               

               
               ecc (0.23007)
               

               
               fli (0.202881)
               

               
               jej (0.197844)
               

               
               fcc (0.197785)
               

               
               gul (0.177588)
               

               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               cli (0.152812)
               

               
               cst (0.140036)
               

               
               nca (0.136874)
               

               
               ese (0.126502)
               

               
               pgl (0.118483)
               

               
               eje (0.0988338)

Expressed library(ies): 45 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cly (1.32706)
               

               
               ece (1.14653)
               

               
               cga (1.11638)
               

               
               jca (0.911681)
               

               
               cag (0.907167)
               

               
               ton (0.877501)
               

               
               csp (0.805932)
               

               
               cov (0.792917)
               

               
               elu (0.770713)
               

               
               hyp (0.714184)
               

               
               fbs (0.701385)
               

               
               eep (0.61282)
               

               
               ebs (0.591506)
               

               
               lnt (0.569233)
               

               
               eye (0.511509)
               

               
               fhi (0.508733)
               

               
               pla (0.401016)
               

               
               ute (0.398353)
               

               
               col (0.390016)
               

               
               nlu (0.383362)
               

               
               nep (0.36785)
               

               
               clu (0.358938)
               

               
               fty (0.351679)
               

               
               mcp (0.341297)
               

               
               eli (0.303628)
               

               
               nbm (0.297974)
               

               
               pty (0.285429)
               

               
               fce (0.271592)
               

               
               eru (0.240096)
               

               
               med (0.232504)
               

               
               ecc (0.23007)
               

               
               fli (0.202881)
               

               
               jej (0.197844)
               

               
               fcc (0.197785)
               

               
               gul (0.177588)
               

               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               cli (0.152812)
               

               
               cst (0.140036)
               

               
               nca (0.136874)
               

               
               ese (0.126502)
               

               
               pgl (0.118483)
               

               
               eje (0.0988338)

	406-513, - strand, RNAz p=0.813289
	550-769, - strand, RNAz p=0.999427

	1-164, gnl\|bosTau2\|chr2 (78141478-78141637)
	1-164, gnl\|Hg17\|chr1 (26290675-26290836)
	1-164, gnl\|Mm7\|chr4 (133507210-133507049)

	332-769, gnl\|bosTau2\|chr2 (78142496-78142947)
	332-769, gnl\|Hg17\|chr1 (26291690-26292155)
	332-769, gnl\|Mm7\|chr4 (133506240-133505843)

	cly (1.32706)
	ece (1.14653)
	cga (1.11638)
	jca (0.911681)
	cag (0.907167)
	ton (0.877501)
	csp (0.805932)
	cov (0.792917)
	elu (0.770713)
	hyp (0.714184)
	fbs (0.701385)
	eep (0.61282)
	ebs (0.591506)
	lnt (0.569233)
	eye (0.511509)
	fhi (0.508733)
	pla (0.401016)
	ute (0.398353)
	col (0.390016)
	nlu (0.383362)
	nep (0.36785)
	clu (0.358938)
	fty (0.351679)
	mcp (0.341297)
	eli (0.303628)
	nbm (0.297974)
	pty (0.285429)
	fce (0.271592)
	eru (0.240096)
	med (0.232504)
	ecc (0.23007)
	fli (0.202881)
	jej (0.197844)
	fcc (0.197785)
	gul (0.177588)
	ill (0.175593)
	duo (0.172801)
	nje (0.16592)
	cki (0.165235)
	cli (0.152812)
	cst (0.140036)
	nca (0.136874)
	ese (0.126502)
	pgl (0.118483)
	eje (0.0988338)