Non-Coding RNA Search

Ss1.1-rjca07c_b20.5

Sequence:


               
               GCAGTCCGGGGCAGCTCCAGGCCATAGCATCTTTGCGCAATGACCTGCGCCTCTGCCTGG
ATGAGACCCTCTCGTGGAACTGTTTTGGCATCTCGCTGCTGGCCATGGCCCTGGGCCTGG
TTGTGCCCATGCTGCACCACCTCTGCGGCTGGGACCTCTGGTACTGCTTCCACCTGTGCC
TGGCCTGGCTGCCCCACCGAGGGCAGCGGCGGGGCGCAGACGCCCTGTTCTATGATGCCT
TCGTGGTCTTTGACAAAGCTCAGAGTGCTGTGGCCGACTGGGTGTACAACGAGCTGCGGG
TGCAGCTGGAGGAGCGCCGTGGGCGCCGCGCACTGCGCCTGTGCCTGGAGGAGCGAGACT
GGTTACCTGGCAAGACGCTCTTCGAGAACCTGTGGGCCTCAGTCTACAGCAGCCGCAAGA
CCCTGTTTGTGCTGGCCCACACGGACCGTGTCAGCGGCCTCTTGCGTGCCAGTTTCCTGC
TGGCCCAGCAGCGCCTGCTGGAGGACCGCAAGGACGTTGTAGTGCTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGTCCGGGGCAGCTCCAGGCCATAGCATCTTTGCGCAATGACCTGCGCCTCTGCCTGG
ATGAGACCCTCTCGTGGAACTGTTTTGGCATCTCGCTGCTGGCCATGGCCCTGGGCCTGG
TTGTGCCCATGCTGCACCACCTCTGCGGCTGGGACCTCTGGTACTGCTTCCACCTGTGCC
TGGCCTGGCTGCCCCACCGAGGGCAGCGGCGGGGCGCAGACGCCCTGTTCTATGATGCCT
TCGTGGTCTTTGACAAAGCTCAGAGTGCTGTGGCCGACTGGGTGTACAACGAGCTGCGGG
TGCAGCTGGAGGAGCGCCGTGGGCGCCGCGCACTGCGCCTGTGCCTGGAGGAGCGAGACT
GGTTACCTGGCAAGACGCTCTTCGAGAACCTGTGGGCCTCAGTCTACAGCAGCCGCAAGA
CCCTGTTTGTGCTGGCCCACACGGACCGTGTCAGCGGCCTCTTGCGTGCCAGTTTCCTGC
TGGCCCAGCAGCGCCTGCTGGAGGACCGCAAGGACGTTGTAGTGCTGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|34576175|gb|AAQ75580.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|34576175|gb|AAQ75580.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-118, - strand, RNAz p=0.618366
               

               
               393-512, - strand, RNAz p=0.677034

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-118, - strand, RNAz p=0.618366
               

               
               393-512, - strand, RNAz p=0.677034

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-528, gnl|bosTau2|chr22 (36793298-36792771)
               

               
               1-528, gnl|Hg17|chr3 (52231000-52230467)
               

               
               1-528, gnl|Mm7|chr9 (105955334-105955864)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-528, gnl|bosTau2|chr22 (36793298-36792771)
               

               
               1-528, gnl|Hg17|chr3 (52231000-52230467)
               

               
               1-528, gnl|Mm7|chr9 (105955334-105955864)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ill (0.175593)
               

               
               jca (0.11396)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)
               

               
               jca (0.11396)

	1-118, - strand, RNAz p=0.618366
	393-512, - strand, RNAz p=0.677034

	1-528, gnl\|bosTau2\|chr22 (36793298-36792771)
	1-528, gnl\|Hg17\|chr3 (52231000-52230467)
	1-528, gnl\|Mm7\|chr9 (105955334-105955864)