Non-Coding RNA Search

Ss1.1-rjca07c_d15.5

Sequence:


               
               GCCGCTATGGAGGAACCAGAGATGAGCTCAAGGGGGAAGAAAGTCACAGATAAGTTCACT
GAGAGTGTCTACGTCCTGGCCAATGAGCCGTCCGTGGCCCTGTACCGGCTGCAGGAGCAT
GTGCGCCGCTCTCTGCCTGAACTGGCCCAACATAAGGCTGACATGCAGCGGTGGGAGGAG
CAGAGCCAGGGAGCCATCTACACAGTGGAGTATGCCTGCAGCGCTGTGAAGAACCTTGTT
GACAGCAGCGTCTACTTCCGCAGTGTAGAGGGTCTCCTCAAACAGGCCATCAGCATCCGA
GACCACATGAATGCCACGGCCCAGGGCCACAGCCCCGAGGAACCACCCCCACCCTCCTCA
GCCTGATCCCAGAAGAGACTTGGAGGTGCTTCAGCCCCTCTGACCCAGCCAGTCCAAACT
GGGCCCTTGGACACAGCCTTGAGGAACTTGGCACGGACCGAAGACAAAGCAAGTATGGCC
AGCGCATTCCTCCTGTTTCCGCCTGGAGCTTCCAGGCCAGCCATGGGTGTCCTGAGACGA
GGCTTTGCTGCCCCTGGATTCTTACCTGCCCCCTCATTGGCCGTGGACACGGCCAAAGCA
TTCTCACAGAGAACCAATAACTGCCACCACTACAGCCCTGATCACGCACCTGCTTGTGCT
GGAGCTGTCACAAGAGTCATCTTTCATCCTTACAGCCCTGTAAGGCAGGTGTCACCCCAA
TACAGATGGGAAAAGAGAGTCTCCAAGAGGTGGCATGATTTGTGCAAGGTCACACAGCTA
GGGAAGAGTAGATCCCAGGCTAGTTTGATCCCAGCCCTGCCTCTGACATGCTGTGTGGCT
TGGGGACTGGTGCTAACCCTCTCTGGTCCTGCCTTTCTCCATCTGACAAAAAAGCCTGGA
CTGGACCCTCTCTCCAGGCTGAGGCAGACATTTGTGTTCCTGCCTGCCTTGACAATGTTC
TGCTTTGAGCAGAAATGCCTACCCCAGCTCAGGCTATATGGAAAAGCCACCCTAAGTCCA
GGGGTGGACATGGGACCCTGTACTGGCTCATCAGAGCCCCCCATCTCCCAGGTCACAGTG
ATTAATTTGAGATGGGCATGTGGTCTAGTGAGAGGTCTTCCCCTAGAATTTTGCTGGAAA
AGTGTGAAATGTACCATCTTCTATTGGGGTTGTTGAGCTAGGCAGATGGAAGGGGACACC
TGAGAACTTTTCATGGGGCCCTGGATCCAGCTGTACCTAACACTAGAAAATCTTGATTCT
TCAATTTCATGATTCCCTAAAGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCGCTATGGAGGAACCAGAGATGAGCTCAAGGGGGAAGAAAGTCACAGATAAGTTCACT
GAGAGTGTCTACGTCCTGGCCAATGAGCCGTCCGTGGCCCTGTACCGGCTGCAGGAGCAT
GTGCGCCGCTCTCTGCCTGAACTGGCCCAACATAAGGCTGACATGCAGCGGTGGGAGGAG
CAGAGCCAGGGAGCCATCTACACAGTGGAGTATGCCTGCAGCGCTGTGAAGAACCTTGTT
GACAGCAGCGTCTACTTCCGCAGTGTAGAGGGTCTCCTCAAACAGGCCATCAGCATCCGA
GACCACATGAATGCCACGGCCCAGGGCCACAGCCCCGAGGAACCACCCCCACCCTCCTCA
GCCTGATCCCAGAAGAGACTTGGAGGTGCTTCAGCCCCTCTGACCCAGCCAGTCCAAACT
GGGCCCTTGGACACAGCCTTGAGGAACTTGGCACGGACCGAAGACAAAGCAAGTATGGCC
AGCGCATTCCTCCTGTTTCCGCCTGGAGCTTCCAGGCCAGCCATGGGTGTCCTGAGACGA
GGCTTTGCTGCCCCTGGATTCTTACCTGCCCCCTCATTGGCCGTGGACACGGCCAAAGCA
TTCTCACAGAGAACCAATAACTGCCACCACTACAGCCCTGATCACGCACCTGCTTGTGCT
GGAGCTGTCACAAGAGTCATCTTTCATCCTTACAGCCCTGTAAGGCAGGTGTCACCCCAA
TACAGATGGGAAAAGAGAGTCTCCAAGAGGTGGCATGATTTGTGCAAGGTCACACAGCTA
GGGAAGAGTAGATCCCAGGCTAGTTTGATCCCAGCCCTGCCTCTGACATGCTGTGTGGCT
TGGGGACTGGTGCTAACCCTCTCTGGTCCTGCCTTTCTCCATCTGACAAAAAAGCCTGGA
CTGGACCCTCTCTCCAGGCTGAGGCAGACATTTGTGTTCCTGCCTGCCTTGACAATGTTC
TGCTTTGAGCAGAAATGCCTACCCCAGCTCAGGCTATATGGAAAAGCCACCCTAAGTCCA
GGGGTGGACATGGGACCCTGTACTGGCTCATCAGAGCCCCCCATCTCCCAGGTCACAGTG
ATTAATTTGAGATGGGCATGTGGTCTAGTGAGAGGTCTTCCCCTAGAATTTTGCTGGAAA
AGTGTGAAATGTACCATCTTCTATTGGGGTTGTTGAGCTAGGCAGATGGAAGGGGACACC
TGAGAACTTTTCATGGGGCCCTGGATCCAGCTGTACCTAACACTAGAAAATCTTGATTCT
TCAATTTCATGATTCCCTAAAGTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|13325263|gb|AAH04449.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|13325263|gb|AAH04449.1|

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               242-438, - strand, RNAz p=0.997626
               

               
               475-594, - strand, RNAz p=0.945941
               

               
               747-859, - strand, RNAz p=0.58181
               

               
               890-1007, - strand, RNAz p=0.994097

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               242-438, - strand, RNAz p=0.997626
               

               
               475-594, - strand, RNAz p=0.945941
               

               
               747-859, - strand, RNAz p=0.58181
               

               
               890-1007, - strand, RNAz p=0.994097

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               96-1281, gnl|bosTau2|chr23 (9872405-9873581)
               

               
               96-1281, gnl|Hg17|chr19 (19158762-19148734)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               96-1281, gnl|bosTau2|chr23 (9872405-9873581)
               

               
               96-1281, gnl|Hg17|chr19 (19158762-19148734)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

Expressed library(ies): 7 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

	242-438, - strand, RNAz p=0.997626
	475-594, - strand, RNAz p=0.945941
	747-859, - strand, RNAz p=0.58181
	890-1007, - strand, RNAz p=0.994097

	96-1281, gnl\|bosTau2\|chr23 (9872405-9873581)
	96-1281, gnl\|Hg17\|chr19 (19158762-19148734)

	cag (0.151194)
	lnt (0.142308)
	pla (0.133672)
	nmm (0.132802)
	cov (0.132153)
	jca (0.11396)
	eje (0.0988338)