Ss1.1-rjca07c_e18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TAAAGCTCCACGCCCTCTACCTCTATAAGTGTGGGCTCAGCGCCCTGCCAGCGGGCATCT TTAGCGGCCTGCACAGCCTGCAGTACCTCTACCTGCAGGACAACCACATCGAGTACCTCC AGGATGACATCTTTGTGGACCTGGTCAACCTCAGCCACCTGTTTCTCCACGGCAACAAGC TGTGGAGCCTGGGCCAGGACACCTTCCGCGGCCTGGTGAACCTGGACCGGCTGCTGCTGC ACGAGAACCAGCTGCAGTGGGTCCACCACAAGGCTTTCCACGACCTCCGCAGGCTGACCA CCCTCTTCCTCTTCAACAACAGTCTCTCCGAGCTGCAGGGAGACTGCCTGGCACCGCTGG CAGCCCTGGAGTTCCTCCGCCTCAACGGGAACGCCTGGGACTGTGGCTGCAGGGCGCGCT CCCTGTGGGAATGGCTGCAGAGGTTCCGTGGCTCCAGCTCCGCTGTCCCCTGTGTGTCCC CCGCGTCTCTGCACGGCCAGGACCTGAAGCTGCTGAGGGCCGAGGACTTCCGGAACTGCA CGGGGCCGGTGTCCCCACACCAGATCAAGTCACACACGCTCACCACCACCGACAGGGCCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TAAAGCTCCACGCCCTCTACCTCTATAAGTGTGGGCTCAGCGCCCTGCCAGCGGGCATCT TTAGCGGCCTGCACAGCCTGCAGTACCTCTACCTGCAGGACAACCACATCGAGTACCTCC AGGATGACATCTTTGTGGACCTGGTCAACCTCAGCCACCTGTTTCTCCACGGCAACAAGC TGTGGAGCCTGGGCCAGGACACCTTCCGCGGCCTGGTGAACCTGGACCGGCTGCTGCTGC ACGAGAACCAGCTGCAGTGGGTCCACCACAAGGCTTTCCACGACCTCCGCAGGCTGACCA CCCTCTTCCTCTTCAACAACAGTCTCTCCGAGCTGCAGGGAGACTGCCTGGCACCGCTGG CAGCCCTGGAGTTCCTCCGCCTCAACGGGAACGCCTGGGACTGTGGCTGCAGGGCGCGCT CCCTGTGGGAATGGCTGCAGAGGTTCCGTGGCTCCAGCTCCGCTGTCCCCTGTGTGTCCC CCGCGTCTCTGCACGGCCAGGACCTGAAGCTGCTGAGGGCCGAGGACTTCCGGAACTGCA CGGGGCCGGTGTCCCCACACCAGATCAAGTCACACACGCTCACCACCACCGACAGGGCCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 42-281, - strand, RNAz p=0.994102 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 42-281, - strand, RNAz p=0.994102 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 3-599, gnl|bosTau2|chr19 (17516955-17516359) | |
| 3-599, gnl|Hg17|chr17 (1787490-1786894) | |
| 3-599, gnl|Mm7|chr11 (75346693-75347289) | |
| 119-548, gnl|bosTau2|chr15 (50692603-50692173) | |
| 119-548, gnl|canFam2|chr26 (32180868-32181164) | |
| 119-548, gnl|danRer3|chrUn (147321309-147321624) | |
| 119-548, gnl|dasNov1|scaffold_117295 (13-328) | |
| 119-548, gnl|echTel1|scaffold_296532 (443-762) | |
| 119-548, gnl|fr1|chrUn (235969228-235969543) | |
| 119-548, gnl|galGal2|chrUn (57386481-57386796) | |
| 119-548, gnl|hg17|chr11 (57000208-57000523) | |
| 119-548, gnl|Hg17|chr11 (57000207-57000637) | |
| 119-548, gnl|loxAfr1|scaffold_23305 (3985-3666) | |
| 119-548, gnl|mm7|chr2 (84716416-84716101) | |
| 119-548, gnl|Mm7|chr2 (84716415-84715985) | |
| 119-548, gnl|monDom2|scaffold_33 (20635216-20635531) | |
| 119-548, gnl|oryCun1|scaffold_199863 (51382-51697) | |
| 119-548, gnl|panTro1|chr9 (57908844-57909159) | |
| 119-548, gnl|rheMac2|chr14 (15940786-15940471) | |
| 119-548, gnl|rn3|chr3 (67995584-67995269) | |
| 119-548, gnl|tetNig1|chr1 (6958655-6958969) | |
| 119-548, gnl|xenTro1|scaffold_379 (958966-959281) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-599, gnl|bosTau2|chr19 (17516955-17516359) | |
| 3-599, gnl|Hg17|chr17 (1787490-1786894) | |
| 3-599, gnl|Mm7|chr11 (75346693-75347289) | |
| 119-548, gnl|bosTau2|chr15 (50692603-50692173) | |
| 119-548, gnl|canFam2|chr26 (32180868-32181164) | |
| 119-548, gnl|danRer3|chrUn (147321309-147321624) | |
| 119-548, gnl|dasNov1|scaffold_117295 (13-328) | |
| 119-548, gnl|echTel1|scaffold_296532 (443-762) | |
| 119-548, gnl|fr1|chrUn (235969228-235969543) | |
| 119-548, gnl|galGal2|chrUn (57386481-57386796) | |
| 119-548, gnl|hg17|chr11 (57000208-57000523) | |
| 119-548, gnl|Hg17|chr11 (57000207-57000637) | |
| 119-548, gnl|loxAfr1|scaffold_23305 (3985-3666) | |
| 119-548, gnl|mm7|chr2 (84716416-84716101) | |
| 119-548, gnl|Mm7|chr2 (84716415-84715985) | |
| 119-548, gnl|monDom2|scaffold_33 (20635216-20635531) | |
| 119-548, gnl|oryCun1|scaffold_199863 (51382-51697) | |
| 119-548, gnl|panTro1|chr9 (57908844-57909159) | |
| 119-548, gnl|rheMac2|chr14 (15940786-15940471) | |
| 119-548, gnl|rn3|chr3 (67995584-67995269) | |
| 119-548, gnl|tetNig1|chr1 (6958655-6958969) | |
| 119-548, gnl|xenTro1|scaffold_379 (958966-959281) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| jca (0.11396) |