Non-Coding RNA Search

Ss1.1-rjca07c_g24.5

Sequence:


               
               GCGGCCGCCACAGCCTCTTCTGGACTCACAGAAGTCTCCCATCTCCTTTGCCTGGGCACT
GTCCATGACACTCCAACCCCTTCTCTAAGAGATGCAGCCCCTCGGAGCACTGCTGGCTGG
TAGAACCATGCCTCACAACTCCAGCCACAGGGAAGACATGGGCCATGTGGGGCCGCATCC
TGAACTTGGCTGCCGGCTCTACCTCCATATCCCTCCGCAGCAGCGACAGGAAGTGGAGCA
GCTCTTGGAGGCCTCAGGTGAACCTGACAAAGGCTGGCAGGGCCTGGCAGGCTACCTGGG
CTACCAAGCTGAGGCTGTGGAGACCATGGCCCGGAGCCAGGTGCCAGCCTACACTCTGCT
GAGGGACTGGGCCATCCGGGAAGGCAGCGGTGCCACCCTCAGGGTGCTAGCAGATGCCCT
GGCTGCCATGGGCCGTGAAGATGTGGTCCAGGTCCTGGATCCCCCAGCTGAGGGCTGCTC
TGTGGTGTGATGCTTCCATAGCCCAGCCTCTCAGGGAACTGCTCTGGTGCTCCCCACCAC
CCATCTCATATGCATTTCCTTTCATGGGTATCCTGGCATTGGTGACCTCAGCCTGCTCTG
TTCTGAGGGGACATAAAGCTCCAGCCACCACCACCTCCTCTCACCCTACCTTCCTCCAGG
ACAGGGACCAGGATATGGGGCAGGGGGATGGCGGGGTGAGGAGGGTTGACAGTGAGTGGC
CCTGCCTCCTGATCCCCATTTTAACTCCCCTTACTTAACCTCAACTTTTTTTTTCTACTT
TTGTATCCCATATTAAAGGAAATTTTGGACCTTTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCCGCCACAGCCTCTTCTGGACTCACAGAAGTCTCCCATCTCCTTTGCCTGGGCACT
GTCCATGACACTCCAACCCCTTCTCTAAGAGATGCAGCCCCTCGGAGCACTGCTGGCTGG
TAGAACCATGCCTCACAACTCCAGCCACAGGGAAGACATGGGCCATGTGGGGCCGCATCC
TGAACTTGGCTGCCGGCTCTACCTCCATATCCCTCCGCAGCAGCGACAGGAAGTGGAGCA
GCTCTTGGAGGCCTCAGGTGAACCTGACAAAGGCTGGCAGGGCCTGGCAGGCTACCTGGG
CTACCAAGCTGAGGCTGTGGAGACCATGGCCCGGAGCCAGGTGCCAGCCTACACTCTGCT
GAGGGACTGGGCCATCCGGGAAGGCAGCGGTGCCACCCTCAGGGTGCTAGCAGATGCCCT
GGCTGCCATGGGCCGTGAAGATGTGGTCCAGGTCCTGGATCCCCCAGCTGAGGGCTGCTC
TGTGGTGTGATGCTTCCATAGCCCAGCCTCTCAGGGAACTGCTCTGGTGCTCCCCACCAC
CCATCTCATATGCATTTCCTTTCATGGGTATCCTGGCATTGGTGACCTCAGCCTGCTCTG
TTCTGAGGGGACATAAAGCTCCAGCCACCACCACCTCCTCTCACCCTACCTTCCTCCAGG
ACAGGGACCAGGATATGGGGCAGGGGGATGGCGGGGTGAGGAGGGTTGACAGTGAGTGGC
CCTGCCTCCTGATCCCCATTTTAACTCCCCTTACTTAACCTCAACTTTTTTTTTCTACTT
TTGTATCCCATATTAAAGGAAATTTTGGACCTTTAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|20805768|gb|AAM28825.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|20805768|gb|AAM28825.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               209-368, + strand, RNAz p=0.953275

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               209-368, + strand, RNAz p=0.953275

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               170-490, gnl|bosTau2|chr22 (41073768-41074088)
               

               
               170-490, gnl|Hg17|chr3 (47029326-47029646)
               

               
               170-490, gnl|Mm7|chr9 (110319440-110319123)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               170-490, gnl|bosTau2|chr22 (41073768-41074088)
               

               
               170-490, gnl|Hg17|chr3 (47029326-47029646)
               

               
               170-490, gnl|Mm7|chr9 (110319440-110319123)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fhi (0.169578)
               

               
               hyp (0.142837)
               

               
               jca (0.11396)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)
               

               
               hyp (0.142837)
               

               
               jca (0.11396)

	170-490, gnl\|bosTau2\|chr22 (41073768-41074088)
	170-490, gnl\|Hg17\|chr3 (47029326-47029646)
	170-490, gnl\|Mm7\|chr9 (110319440-110319123)