Non-Coding RNA Search

Ss1.1-rjca08c_c24.5

Sequence:


               
               CTGCCGCCCCCCCAGACTCTGAGAAGCCGCTGCTGTCCCTGGAGCCCTCGGAGGGGCGCT
CGCAAGCCCCGACCAAGAAGCTCCGCAAGCCTAGGACCATCTACTCGAATCTGCAGCTGC
AGCACCTGAACCAGCGTTTCCAGCACACGCAGTACCTGGCGCTGCCCGAGAGGGCCCAGC
TGGCCGCGCAGCTCGGCCTCACCCAGACGCAGGTAAAGATCTGGTTTCAGAACAAACGCT
CCAAGTACAAGAAGCTCCTGAAGCAAAACTCTGGGGGACAGGAAGGGGACTTTCCAAGGA
GGTCCCCCTCCCTCTCTCCCTGCTCCCCACCCCTTGCAGCCCTCTGGGATCTACCCAAGG
CGGGGGCCCTGCCCACTGGTGGCTATGGCAACAGCTTTGGAGCCTGGTATCAGCATCACT
CCCCAGATGTCCTGGCTCCACCTCAGATGATGTGAGTTTGGCCCACCCCATTGACAAGTA
AAAGCAGAAGCGAAGAGGACATCCAGAGTCTTCCAGCTGATCGCCATCAAGCCCCACCCA
CTTTTGTTTCTCACAACTGATGCACCTGTTCGCCATGCTCTGAGGTAGACGGGACACCCA
AAATGAGGAGTTTTGTGGACCTAAGGGGGATTTTTGCTCTCTTCCTAAAAAAGCCCCTTT
TCCCCGTGTCTTCCCACATTGGATAATGGATCCAATTATCCATCTGATTCAACACGTATT
TATTAAGAGTCGAGTCCTCATACCTAACAAACCCACATGCACACACTCTTGAGAACCCAG
TAGGGTAACCCTTTGGGGAGAGTGCGGACACACAGGCTCTCTGGGTAACTGTAGGTAGAG
AGGGCCCCAAAGAAGTGGGGTGGGCCCAGAAATTCTGCTCCTCATAGCTGTCTCTGTCCA
GAGGAACTACTCATATTTATAACCAACCTGACTAGCAGCCCCCCAAGCTCTTACCACCCC
CCCATATCATGAGCATCTTGATATTAAAGTTTGTACAGAAACCTGTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGCCGCCCCCCCAGACTCTGAGAAGCCGCTGCTGTCCCTGGAGCCCTCGGAGGGGCGCT
CGCAAGCCCCGACCAAGAAGCTCCGCAAGCCTAGGACCATCTACTCGAATCTGCAGCTGC
AGCACCTGAACCAGCGTTTCCAGCACACGCAGTACCTGGCGCTGCCCGAGAGGGCCCAGC
TGGCCGCGCAGCTCGGCCTCACCCAGACGCAGGTAAAGATCTGGTTTCAGAACAAACGCT
CCAAGTACAAGAAGCTCCTGAAGCAAAACTCTGGGGGACAGGAAGGGGACTTTCCAAGGA
GGTCCCCCTCCCTCTCTCCCTGCTCCCCACCCCTTGCAGCCCTCTGGGATCTACCCAAGG
CGGGGGCCCTGCCCACTGGTGGCTATGGCAACAGCTTTGGAGCCTGGTATCAGCATCACT
CCCCAGATGTCCTGGCTCCACCTCAGATGATGTGAGTTTGGCCCACCCCATTGACAAGTA
AAAGCAGAAGCGAAGAGGACATCCAGAGTCTTCCAGCTGATCGCCATCAAGCCCCACCCA
CTTTTGTTTCTCACAACTGATGCACCTGTTCGCCATGCTCTGAGGTAGACGGGACACCCA
AAATGAGGAGTTTTGTGGACCTAAGGGGGATTTTTGCTCTCTTCCTAAAAAAGCCCCTTT
TCCCCGTGTCTTCCCACATTGGATAATGGATCCAATTATCCATCTGATTCAACACGTATT
TATTAAGAGTCGAGTCCTCATACCTAACAAACCCACATGCACACACTCTTGAGAACCCAG
TAGGGTAACCCTTTGGGGAGAGTGCGGACACACAGGCTCTCTGGGTAACTGTAGGTAGAG
AGGGCCCCAAAGAAGTGGGGTGGGCCCAGAAATTCTGCTCCTCATAGCTGTCTCTGTCCA
GAGGAACTACTCATATTTATAACCAACCTGACTAGCAGCCCCCCAAGCTCTTACCACCCC
CCCATATCATGAGCATCTTGATATTAAAGTTTGTACAGAAACCTGTAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|3068597|gb|AAC14398.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|3068597|gb|AAC14398.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               211-446, - strand, RNAz p=0.99788
               

               
               619-717, - strand, RNAz p=0.995223

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               211-446, - strand, RNAz p=0.99788
               

               
               619-717, - strand, RNAz p=0.995223

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               211-460, gnl|bosTau2|chr19 (29424609-29424360)
               

               
               211-460, gnl|Hg17|chr17 (45406062-45406311)
               

               
               211-460, gnl|Mm7|chr11 (95250510-95250258)
               


               
               542-1003, gnl|bosTau2|chr19 (29423897-29423420)
               

               
               542-1003, gnl|Hg17|chr17 (45406843-45407318)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               211-460, gnl|bosTau2|chr19 (29424609-29424360)
               

               
               211-460, gnl|Hg17|chr17 (45406062-45406311)
               

               
               211-460, gnl|Mm7|chr11 (95250510-95250258)
               


               
               542-1003, gnl|bosTau2|chr19 (29423897-29423420)
               

               
               542-1003, gnl|Hg17|chr17 (45406843-45407318)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ill (0.175593)
               

               
               jca (0.11396)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)
               

               
               jca (0.11396)

	211-446, - strand, RNAz p=0.99788
	619-717, - strand, RNAz p=0.995223

	211-460, gnl\|bosTau2\|chr19 (29424609-29424360)
	211-460, gnl\|Hg17\|chr17 (45406062-45406311)
	211-460, gnl\|Mm7\|chr11 (95250510-95250258)

	542-1003, gnl\|bosTau2\|chr19 (29423897-29423420)
	542-1003, gnl\|Hg17\|chr17 (45406843-45407318)