Non-Coding RNA Search

Ss1.1-rjca08c_d1.5

Sequence:


               
               CTGGGCGATCACACCACTCATGTACCCAGCCTCCTTCTTCTTCTCCGTGCCCAGCACGGC
ATATGTTGTACTCACCTGCATCAACCTCTTTATTGGCATCAATGGCAGCATGGCCACCTT
CGTGCTTGAGCTCTTCTCTGATCAGAAGTTGCAGGAGGTGAGCCGGATCCTGAAACGGGT
CTTCCTTATCTTTCCCCACTTCTGCCTGGGCCGGGGGCTTATCGACATGGTGCGGAACCA
GGCCATGGCTGATGCCTTTGAGCGCTTGGGAGATGGGCATTTCCAGTCACCCCTGCGCTG
GGAGGTGGTCGGCAAGAACCTCTTGGCCATGGCAATACAGGGGCCCATCTTCCTCCTCTT
TACGCTCCTGCTGCAGCACCGCAACCGCCTCCTGCCAGAACCCAAGCTGAGGCCGCTGCC
CCCCCTGGGAGAGGAGGATGAGGATGTGGCCCGTGAACGGGAACGGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGGCGATCACACCACTCATGTACCCAGCCTCCTTCTTCTTCTCCGTGCCCAGCACGGC
ATATGTTGTACTCACCTGCATCAACCTCTTTATTGGCATCAATGGCAGCATGGCCACCTT
CGTGCTTGAGCTCTTCTCTGATCAGAAGTTGCAGGAGGTGAGCCGGATCCTGAAACGGGT
CTTCCTTATCTTTCCCCACTTCTGCCTGGGCCGGGGGCTTATCGACATGGTGCGGAACCA
GGCCATGGCTGATGCCTTTGAGCGCTTGGGAGATGGGCATTTCCAGTCACCCCTGCGCTG
GGAGGTGGTCGGCAAGAACCTCTTGGCCATGGCAATACAGGGGCCCATCTTCCTCCTCTT
TACGCTCCTGCTGCAGCACCGCAACCGCCTCCTGCCAGAACCCAAGCTGAGGCCGCTGCC
CCCCCTGGGAGAGGAGGATGAGGATGTGGCCCGTGAACGGGAACGGGT

Aligned organism(s): 18 entry(ies)

More info

Aligned organism(s): 18 entry(ies)

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               1-145, gnl|bosTau2|chr7 (10314786-10314930)
               

               
               1-145, gnl|canFam2|chr9 (51960049-51959886)
               

               
               1-145, gnl|danRer3|chr5 (14071169-14071329)
               

               
               1-145, gnl|dasNov1|scaffold_981 (53252-53407)
               

               
               1-145, gnl|echTel1|scaffold_130949 (1042-879)
               

               
               1-145, gnl|fr1|chrUn (84093480-84093638)
               

               
               1-145, gnl|galGal2|chrUn (36414608-36414832)
               

               
               1-145, gnl|Hg17|chr19 (1008914-1009058)
               

               
               1-145, gnl|hg17|chr9 (137181692-137181855)
               

               
               1-145, gnl|loxAfr1|scaffold_35256 (14556-14695)
               

               
               1-145, gnl|Mm7|chr10 (79791052-79791196)
               

               
               1-145, gnl|mm7|chr2 (25451986-25451823)
               

               
               1-145, gnl|monDom2|scaffold_1 (188278015-188277852)
               

               
               1-145, gnl|oryCun1|scaffold_173898 (17770-17930)
               

               
               1-145, gnl|rheMac2|chr15 (1248688-1248525)
               

               
               1-145, gnl|rn3|chr3 (3611594-3611431)
               

               
               1-145, gnl|tetNig1|chrUn_random (99488717-99488877)
               

               
               1-145, gnl|xenTro1|scaffold_302 (1283022-1283182)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-145, gnl|bosTau2|chr7 (10314786-10314930)
               

               
               1-145, gnl|canFam2|chr9 (51960049-51959886)
               

               
               1-145, gnl|danRer3|chr5 (14071169-14071329)
               

               
               1-145, gnl|dasNov1|scaffold_981 (53252-53407)
               

               
               1-145, gnl|echTel1|scaffold_130949 (1042-879)
               

               
               1-145, gnl|fr1|chrUn (84093480-84093638)
               

               
               1-145, gnl|galGal2|chrUn (36414608-36414832)
               

               
               1-145, gnl|Hg17|chr19 (1008914-1009058)
               

               
               1-145, gnl|hg17|chr9 (137181692-137181855)
               

               
               1-145, gnl|loxAfr1|scaffold_35256 (14556-14695)
               

               
               1-145, gnl|Mm7|chr10 (79791052-79791196)
               

               
               1-145, gnl|mm7|chr2 (25451986-25451823)
               

               
               1-145, gnl|monDom2|scaffold_1 (188278015-188277852)
               

               
               1-145, gnl|oryCun1|scaffold_173898 (17770-17930)
               

               
               1-145, gnl|rheMac2|chr15 (1248688-1248525)
               

               
               1-145, gnl|rn3|chr3 (3611594-3611431)
               

               
               1-145, gnl|tetNig1|chrUn_random (99488717-99488877)
               

               
               1-145, gnl|xenTro1|scaffold_302 (1283022-1283182)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               jca (0.22792)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.22792)

	1-145, gnl\|bosTau2\|chr7 (10314786-10314930)
	1-145, gnl\|canFam2\|chr9 (51960049-51959886)
	1-145, gnl\|danRer3\|chr5 (14071169-14071329)
	1-145, gnl\|dasNov1\|scaffold_981 (53252-53407)
	1-145, gnl\|echTel1\|scaffold_130949 (1042-879)
	1-145, gnl\|fr1\|chrUn (84093480-84093638)
	1-145, gnl\|galGal2\|chrUn (36414608-36414832)
	1-145, gnl\|Hg17\|chr19 (1008914-1009058)
	1-145, gnl\|hg17\|chr9 (137181692-137181855)
	1-145, gnl\|loxAfr1\|scaffold_35256 (14556-14695)
	1-145, gnl\|Mm7\|chr10 (79791052-79791196)
	1-145, gnl\|mm7\|chr2 (25451986-25451823)
	1-145, gnl\|monDom2\|scaffold_1 (188278015-188277852)
	1-145, gnl\|oryCun1\|scaffold_173898 (17770-17930)
	1-145, gnl\|rheMac2\|chr15 (1248688-1248525)
	1-145, gnl\|rn3\|chr3 (3611594-3611431)
	1-145, gnl\|tetNig1\|chrUn_random (99488717-99488877)
	1-145, gnl\|xenTro1\|scaffold_302 (1283022-1283182)