Non-Coding RNA Search

Ss1.1-rjca08c_o17.5

Sequence:


               
               AGGGGCCCCTGATCCCAATCTGGCCCCATGGCTGCCCTCAGCAGCCCCCACAGCCCTGGG
GGAGGCCAGCTCAGCAGGCCGCAGCCGGAGGGATGATCGGTGGCTGCTGGTGGCACTCCT
AGTGCCAACATGCGTCTTCTTGGTGGTCCTACTTGCACTGGGCATCGTGTACTGTACCCG
CTGTGGCCCTCACGCGCCCAATAAGCGCGTGACTGACTGCTATCGCTGGGTCACCCACGC
TGGGAGCAAGGGCCCTACGGAACCCGCGCCCCATCGGGGCAGCCTCACAGGGGTGCAGAC
CTGCAGAACCAGCGTGTGATGGGGCGCAGCCCCCCCCATGCGGGGTGGGGGGAAGGGGCA
CGCATTGGACACACAGCCCAGGCTGCACCAGGGACCCACGGGGGCTGCCCAGCTGGACAG
AGGGCTTCCTGCTCCTCCCGGGCCCAGCCAGGCTCCTTTCTCAGTCCACTGCCTGACTTG
ACTGTTGGGAACCCTGTTTCCTGGCCCAGCACTCACAACCGAGGAGATGCCGAGGCCCCC
AGGACCTCAGGGGGTGGGTGCTGGGGTCTTCTCCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGGGCCCCTGATCCCAATCTGGCCCCATGGCTGCCCTCAGCAGCCCCCACAGCCCTGGG
GGAGGCCAGCTCAGCAGGCCGCAGCCGGAGGGATGATCGGTGGCTGCTGGTGGCACTCCT
AGTGCCAACATGCGTCTTCTTGGTGGTCCTACTTGCACTGGGCATCGTGTACTGTACCCG
CTGTGGCCCTCACGCGCCCAATAAGCGCGTGACTGACTGCTATCGCTGGGTCACCCACGC
TGGGAGCAAGGGCCCTACGGAACCCGCGCCCCATCGGGGCAGCCTCACAGGGGTGCAGAC
CTGCAGAACCAGCGTGTGATGGGGCGCAGCCCCCCCCATGCGGGGTGGGGGGAAGGGGCA
CGCATTGGACACACAGCCCAGGCTGCACCAGGGACCCACGGGGGCTGCCCAGCTGGACAG
AGGGCTTCCTGCTCCTCCCGGGCCCAGCCAGGCTCCTTTCTCAGTCCACTGCCTGACTTG
ACTGTTGGGAACCCTGTTTCCTGGCCCAGCACTCACAACCGAGGAGATGCCGAGGCCCCC
AGGACCTCAGGGGGTGGGTGCTGGGGTCTTCTCCAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               264-576, + strand, RNAz p=0.962021

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               264-576, + strand, RNAz p=0.962021

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC051340, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC051340, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               264-576, gnl|bosTau2|chr29 (37199569-37199882)
               

               
               264-576, gnl|Hg17|chr11 (65838853-65838561)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               264-576, gnl|bosTau2|chr29 (37199569-37199882)
               

               
               264-576, gnl|Hg17|chr11 (65838853-65838561)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               jca (0.22792)
               

               
               ese (0.126502)
               

               
               eep (0.122564)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.22792)
               

               
               ese (0.126502)
               

               
               eep (0.122564)

	264-576, gnl\|bosTau2\|chr29 (37199569-37199882)
	264-576, gnl\|Hg17\|chr11 (65838853-65838561)