Non-Coding RNA Search

Ss1.1-rjca09c_c20.5

Sequence:


               
               CAGGCATCAATATTTTGTTGCTCAGCTTCATGATCCTCTCTGGCTTCACTAAGGGAGACC
TGCATAACTGGCAGCTCACAGAACAGGACTACAAACTGGCCACATCTGGATCCTCTGACA
GCTATAGCCTGGGCCGTCTGGGTTCTGGAGGGTTTGTGCCCTTTGGCTTTGAAGGGATTC
TCCAGGGAGCAGCTATGCCTTTCTACTCATTCTTTGGTCTCAATGCCATTATCACTACAG
GGAAAGAAACCCCCAACCCTCATCGTTCCATCCCTTGGAGCCTATGGATCTTCATCTCCA
GCTGCTTTTTGGCCTACTCTGGTGTCACAGCAGCTCTCACCCTCATGGTGCCCTACTACC
AGATTCATCCTTACAGTCCATTGCCGCAGGCTTTTCACCATGTTGGTTGGGCTCCTGCCG
GATACTTCGTGGCTGTTGTCATCCTGTGTGCTCTTTTATACAGCCTCCTGGTTGTCATGT
TGGCCATGTCTCGGTTGATTGGTGCAATGGCAGAGGATGGGCTCCTTTTCCAGGGACTTG
GCCAAATCTACGCCCGAAGAGGCACCCCCATCGTGGCCATCCTGGTTTCTGCAACTCTTT
CAGGGATCCTGGCAGTACTTTTCAAGATCTTTCATCTTGTGGAACTCATGTCAGTTGGGG
TCCTGCTTTCTTACTTCCTTGTGACTTTTTCTGTCCTGATCCTCAGGTACCAACCAGACC
AGAGTTTCAGCAAGAAGGCGAAAGCAGAGGAGGAAATTCAGCTGAAGCATACAGCTGAAG
AAAGTCCTTTGGGATCTGTACCTGAAGCAGGAACCTCAAACCCTCTAAAGAGTCTGTGGG
AGCCTGTCAGCACCACCCCCACTCTGAAATCTGGCCAGATGGTCTACGGATGTGCCTTCC
TGCTGGTTCTCCTGCTGACCATCCTGAGCCTGCTTCTGGCCCTGTGGCCCAGCCGCGTGT
TCTCTGGAGACCCCGGGTTCACAGCAGGGGCTGTGCTGCTGCTGCTGCTCATTGCGGGGA
TCACTGCCATCATTTGGAGGCAGCCCCAGAACCCCTCTCCTCTTCCCTTCAGGGTCCCTG
CTCTGCCCGTGCTCTCAGTGCTGAGCATCTTTGTGACTGTCTACCTGATGATGCAGCTGT
CCTCTGTGACCTGGGCCCAGTTTGGCATCTGGAATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGCATCAATATTTTGTTGCTCAGCTTCATGATCCTCTCTGGCTTCACTAAGGGAGACC
TGCATAACTGGCAGCTCACAGAACAGGACTACAAACTGGCCACATCTGGATCCTCTGACA
GCTATAGCCTGGGCCGTCTGGGTTCTGGAGGGTTTGTGCCCTTTGGCTTTGAAGGGATTC
TCCAGGGAGCAGCTATGCCTTTCTACTCATTCTTTGGTCTCAATGCCATTATCACTACAG
GGAAAGAAACCCCCAACCCTCATCGTTCCATCCCTTGGAGCCTATGGATCTTCATCTCCA
GCTGCTTTTTGGCCTACTCTGGTGTCACAGCAGCTCTCACCCTCATGGTGCCCTACTACC
AGATTCATCCTTACAGTCCATTGCCGCAGGCTTTTCACCATGTTGGTTGGGCTCCTGCCG
GATACTTCGTGGCTGTTGTCATCCTGTGTGCTCTTTTATACAGCCTCCTGGTTGTCATGT
TGGCCATGTCTCGGTTGATTGGTGCAATGGCAGAGGATGGGCTCCTTTTCCAGGGACTTG
GCCAAATCTACGCCCGAAGAGGCACCCCCATCGTGGCCATCCTGGTTTCTGCAACTCTTT
CAGGGATCCTGGCAGTACTTTTCAAGATCTTTCATCTTGTGGAACTCATGTCAGTTGGGG
TCCTGCTTTCTTACTTCCTTGTGACTTTTTCTGTCCTGATCCTCAGGTACCAACCAGACC
AGAGTTTCAGCAAGAAGGCGAAAGCAGAGGAGGAAATTCAGCTGAAGCATACAGCTGAAG
AAAGTCCTTTGGGATCTGTACCTGAAGCAGGAACCTCAAACCCTCTAAAGAGTCTGTGGG
AGCCTGTCAGCACCACCCCCACTCTGAAATCTGGCCAGATGGTCTACGGATGTGCCTTCC
TGCTGGTTCTCCTGCTGACCATCCTGAGCCTGCTTCTGGCCCTGTGGCCCAGCCGCGTGT
TCTCTGGAGACCCCGGGTTCACAGCAGGGGCTGTGCTGCTGCTGCTGCTCATTGCGGGGA
TCACTGCCATCATTTGGAGGCAGCCCCAGAACCCCTCTCCTCTTCCCTTCAGGGTCCCTG
CTCTGCCCGTGCTCTCAGTGCTGAGCATCTTTGTGACTGTCTACCTGATGATGCAGCTGT
CCTCTGTGACCTGGGCCCAGTTTGGCATCTGGAATG

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

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               240-463, gnl|bosTau2|chr3 (68645664-68645887)
               

               
               240-463, gnl|Hg17|chrX (69930892-69930669)
               

               
               240-463, gnl|Mm7|chrUn_random (1720154-1720377)
               


               
               705-904, gnl|bosTau2|chr3 (68646582-68646781)
               

               
               705-904, gnl|Hg17|chrX (69929914-69929748)
               

               
               705-904, gnl|Mm7|chrUn_random (1720998-1721209)
               


               
               906-1084, gnl|bosTau2|chr18 (52914734-52914556)
               

               
               906-1084, gnl|Hg17|chrX (69929565-69929387)
               

               
               906-1084, gnl|Mm7|chrUn_random (1721357-1721541)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               240-463, gnl|bosTau2|chr3 (68645664-68645887)
               

               
               240-463, gnl|Hg17|chrX (69930892-69930669)
               

               
               240-463, gnl|Mm7|chrUn_random (1720154-1720377)
               


               
               705-904, gnl|bosTau2|chr3 (68646582-68646781)
               

               
               705-904, gnl|Hg17|chrX (69929914-69929748)
               

               
               705-904, gnl|Mm7|chrUn_random (1720998-1721209)
               


               
               906-1084, gnl|bosTau2|chr18 (52914734-52914556)
               

               
               906-1084, gnl|Hg17|chrX (69929565-69929387)
               

               
               906-1084, gnl|Mm7|chrUn_random (1721357-1721541)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

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               spl (0.143184)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

	240-463, gnl\|bosTau2\|chr3 (68645664-68645887)
	240-463, gnl\|Hg17\|chrX (69930892-69930669)
	240-463, gnl\|Mm7\|chrUn_random (1720154-1720377)

	705-904, gnl\|bosTau2\|chr3 (68646582-68646781)
	705-904, gnl\|Hg17\|chrX (69929914-69929748)
	705-904, gnl\|Mm7\|chrUn_random (1720998-1721209)

	906-1084, gnl\|bosTau2\|chr18 (52914734-52914556)
	906-1084, gnl\|Hg17\|chrX (69929565-69929387)
	906-1084, gnl\|Mm7\|chrUn_random (1721357-1721541)