Non-Coding RNA Search

Ss1.1-rjca09c_h16.5

Sequence:


               
               CTCTGGCCTGGTGCCCCTGCCCCCGGTCCCAACCTGAGTGCCAGGAATAGGGGCAGGAGG
ACGGAGGGTGCCCTCTTCTGTCCGTGACAGAAGCCCTGGAGAGGGGGCTCTTGTGGCAGC
TGGTTGCCACTCCTTGAGCAGGGGTGGGAGGGCCCCATTCTTGGAAGGGAGTGGAAGGAG
AAAAGGGCTTCGGCTTTCTCTCCATCCTCTCCCACCCAGCTCGCCCCCACCACTCCTTTC
CCCTCCCCCACTCTACACCAGAACTTGCCTCAACCCCTGACCCTTTTCACAAGATCTTTG
CCCAAGAAAATCCAATCCCATTGGCACATGACTCCAAAGATCCTGAACAGCCCCTAATGG
GGGGCCGGGTTGGGGTGGGAAGGGAACCCCAGTCCCACAGGGACAGAGTCTGTCCGCCCC
CCAACCTTTTCCCCTTCCCTTCCACTTCCCCAAGCCCAACTTCTCTCCAGGCTGTTTCTT
TTTTTTTTTTTTGTATGACTGTAAACATAGATAGTGCTTTATTTTGTTAATAATAAGATA
ATGATGAGTAACTTAACCAGCATATTTCTCCTGTTTACCCTTGGAGGAATTGTTTGTTTG
TTTTCTGTTGGCATAATAAAGACAGACCATTTCAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTGGCCTGGTGCCCCTGCCCCCGGTCCCAACCTGAGTGCCAGGAATAGGGGCAGGAGG
ACGGAGGGTGCCCTCTTCTGTCCGTGACAGAAGCCCTGGAGAGGGGGCTCTTGTGGCAGC
TGGTTGCCACTCCTTGAGCAGGGGTGGGAGGGCCCCATTCTTGGAAGGGAGTGGAAGGAG
AAAAGGGCTTCGGCTTTCTCTCCATCCTCTCCCACCCAGCTCGCCCCCACCACTCCTTTC
CCCTCCCCCACTCTACACCAGAACTTGCCTCAACCCCTGACCCTTTTCACAAGATCTTTG
CCCAAGAAAATCCAATCCCATTGGCACATGACTCCAAAGATCCTGAACAGCCCCTAATGG
GGGGCCGGGTTGGGGTGGGAAGGGAACCCCAGTCCCACAGGGACAGAGTCTGTCCGCCCC
CCAACCTTTTCCCCTTCCCTTCCACTTCCCCAAGCCCAACTTCTCTCCAGGCTGTTTCTT
TTTTTTTTTTTTGTATGACTGTAAACATAGATAGTGCTTTATTTTGTTAATAATAAGATA
ATGATGAGTAACTTAACCAGCATATTTCTCCTGTTTACCCTTGGAGGAATTGTTTGTTTG
TTTTCTGTTGGCATAATAAAGACAGACCATTTCAAAAAAAAAAAAAAA

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               335-610, - strand, RNAz p=0.997706
               

               
               343-450, - strand, RNAz p=0.992293
               

               
               352-469, - strand, RNAz p=0.988372
               

               
               491-607, - strand, RNAz p=0.767525

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               335-610, - strand, RNAz p=0.997706
               

               
               343-450, - strand, RNAz p=0.992293
               

               
               352-469, - strand, RNAz p=0.988372
               

               
               491-607, - strand, RNAz p=0.767525

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               200-637, gnl|bosTau2|chr23 (16425157-16424746)
               

               
               200-637, gnl|canFam2|chr38 (3720820-3721054)
               

               
               200-637, gnl|canFam2|chr38 (3721205-3720880)
               

               
               200-637, gnl|hg17|chr1 (200828111-200828376)
               

               
               200-637, gnl|Hg17|chr1 (200828116-200828528)
               

               
               200-637, gnl|hg17|chr12 (59591902-59592246)
               

               
               200-637, gnl|loxAfr1|scaffold_11302 (29056-29324)
               

               
               200-637, gnl|loxAfr1|scaffold_11302 (29478-29141)
               

               
               200-637, gnl|mm7|chr1 (133283518-133283345)
               

               
               200-637, gnl|mm7|chr1_random (7592615-7592864)
               

               
               200-637, gnl|monDom2|scaffold_13 (4505607-4505942)
               

               
               200-637, gnl|monDom2|scaffold_13 (4506092-4505765)
               

               
               200-637, gnl|panTro1|chr1 (183768473-183768738)
               

               
               200-637, gnl|panTro1|chr10 (60856284-60856636)
               

               
               200-637, gnl|rheMac2|chr1 (166304365-166304100)
               

               
               200-637, gnl|rheMac2|chr11 (58110231-58110563)
               

               
               200-637, gnl|rn3|chr13 (46313190-46312988)
               

               
               200-637, gnl|rn3|chr13 (46312865-46313118)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               200-637, gnl|bosTau2|chr23 (16425157-16424746)
               

               
               200-637, gnl|canFam2|chr38 (3720820-3721054)
               

               
               200-637, gnl|canFam2|chr38 (3721205-3720880)
               

               
               200-637, gnl|hg17|chr1 (200828111-200828376)
               

               
               200-637, gnl|Hg17|chr1 (200828116-200828528)
               

               
               200-637, gnl|hg17|chr12 (59591902-59592246)
               

               
               200-637, gnl|loxAfr1|scaffold_11302 (29056-29324)
               

               
               200-637, gnl|loxAfr1|scaffold_11302 (29478-29141)
               

               
               200-637, gnl|mm7|chr1 (133283518-133283345)
               

               
               200-637, gnl|mm7|chr1_random (7592615-7592864)
               

               
               200-637, gnl|monDom2|scaffold_13 (4505607-4505942)
               

               
               200-637, gnl|monDom2|scaffold_13 (4506092-4505765)
               

               
               200-637, gnl|panTro1|chr1 (183768473-183768738)
               

               
               200-637, gnl|panTro1|chr10 (60856284-60856636)
               

               
               200-637, gnl|rheMac2|chr1 (166304365-166304100)
               

               
               200-637, gnl|rheMac2|chr11 (58110231-58110563)
               

               
               200-637, gnl|rn3|chr13 (46313190-46312988)
               

               
               200-637, gnl|rn3|chr13 (46312865-46313118)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               jca (0.11396)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.11396)

	335-610, - strand, RNAz p=0.997706
	343-450, - strand, RNAz p=0.992293
	352-469, - strand, RNAz p=0.988372
	491-607, - strand, RNAz p=0.767525

	200-637, gnl\|bosTau2\|chr23 (16425157-16424746)
	200-637, gnl\|canFam2\|chr38 (3720820-3721054)
	200-637, gnl\|canFam2\|chr38 (3721205-3720880)
	200-637, gnl\|hg17\|chr1 (200828111-200828376)
	200-637, gnl\|Hg17\|chr1 (200828116-200828528)
	200-637, gnl\|hg17\|chr12 (59591902-59592246)
	200-637, gnl\|loxAfr1\|scaffold_11302 (29056-29324)
	200-637, gnl\|loxAfr1\|scaffold_11302 (29478-29141)
	200-637, gnl\|mm7\|chr1 (133283518-133283345)
	200-637, gnl\|mm7\|chr1_random (7592615-7592864)
	200-637, gnl\|monDom2\|scaffold_13 (4505607-4505942)
	200-637, gnl\|monDom2\|scaffold_13 (4506092-4505765)
	200-637, gnl\|panTro1\|chr1 (183768473-183768738)
	200-637, gnl\|panTro1\|chr10 (60856284-60856636)
	200-637, gnl\|rheMac2\|chr1 (166304365-166304100)
	200-637, gnl\|rheMac2\|chr11 (58110231-58110563)
	200-637, gnl\|rn3\|chr13 (46313190-46312988)
	200-637, gnl\|rn3\|chr13 (46312865-46313118)