Non-Coding RNA Search

Ss1.1-rjca10c_a18.5

Sequence:


               
               TAAAAGCACAACTACCAGCCCGGCTGGGCTAGCGATCCGATCGCAGCTGGGCCGAAACTC
CGTCTGTCTCCGAGAGACCATGGCCGGGTCCCCGCGCTCCCCGCTGCTCCTGCTGGCCGC
CCTGGCCCTGGCCCTCGCCCTGGCCGTGAGCCCCGCGGCCGGACAGGGCCACAAGGGCCG
CCTGGTGGGCGGCCTAATAGACGCGGATGTCAACGAGGAGGGCGTGCAGCAGGCGCTGTC
CTTTGCCCTCAGCGAGTACAACAAAGCGAGCAATGACGCCTACCACGGCCGCGTGCTGCG
CGTGCTGCGCGTCCGCAAGCAGGTCGTGGCTGGGATGAACTACTTCTTGGAAGTGGAGAT
TGGCCGAACCACGTGCACCAAGTCCCAGGCCAACCTGGACAACTGTCCCTTCCCCAACCA
GCCGGACCTGCAGAAGAAAACGCTGTGCTCTTTCCAAGTTTACACCGTCCCCTGGAAGGG
CACCACCTCCCTGGTGAAGTCCAGCTGTCGCGATGAATAGGGGACCCGGCAGCAGGCGGG
CTGCGGACTGCCTCTCACTCACGTCTCCGATGGGTGACCCACCTGGTGGATGCGCCCTCT
GCGTGCACCGCAGCGACCCACACAGAAGGCTCCTCCTGCCTTTTTTAACTCCTTTTTTAA
CTCCTTTCTTTCTTAATTGCTTTCTCCAGGTGCACCATGCATGTTGTCTGCTATGTTCCT
CTCAATAAAAAAAGTAACAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAAAGCACAACTACCAGCCCGGCTGGGCTAGCGATCCGATCGCAGCTGGGCCGAAACTC
CGTCTGTCTCCGAGAGACCATGGCCGGGTCCCCGCGCTCCCCGCTGCTCCTGCTGGCCGC
CCTGGCCCTGGCCCTCGCCCTGGCCGTGAGCCCCGCGGCCGGACAGGGCCACAAGGGCCG
CCTGGTGGGCGGCCTAATAGACGCGGATGTCAACGAGGAGGGCGTGCAGCAGGCGCTGTC
CTTTGCCCTCAGCGAGTACAACAAAGCGAGCAATGACGCCTACCACGGCCGCGTGCTGCG
CGTGCTGCGCGTCCGCAAGCAGGTCGTGGCTGGGATGAACTACTTCTTGGAAGTGGAGAT
TGGCCGAACCACGTGCACCAAGTCCCAGGCCAACCTGGACAACTGTCCCTTCCCCAACCA
GCCGGACCTGCAGAAGAAAACGCTGTGCTCTTTCCAAGTTTACACCGTCCCCTGGAAGGG
CACCACCTCCCTGGTGAAGTCCAGCTGTCGCGATGAATAGGGGACCCGGCAGCAGGCGGG
CTGCGGACTGCCTCTCACTCACGTCTCCGATGGGTGACCCACCTGGTGGATGCGCCCTCT
GCGTGCACCGCAGCGACCCACACAGAAGGCTCCTCCTGCCTTTTTTAACTCCTTTTTTAA
CTCCTTTCTTTCTTAATTGCTTTCTCCAGGTGCACCATGCATGTTGTCTGCTATGTTCCT
CTCAATAAAAAAAGTAACAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q54A26_BOVIN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q54A26_BOVIN

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               39-324, gnl|bosTau2|chr13 (27247396-27247689)
               

               
               39-324, gnl|Hg17|chr20 (23566567-23566255)
               

               
               39-324, gnl|Mm7|chr2 (148616289-148616008)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               39-324, gnl|bosTau2|chr13 (27247396-27247689)
               

               
               39-324, gnl|Hg17|chr20 (23566567-23566255)
               

               
               39-324, gnl|Mm7|chr2 (148616289-148616008)

Expressed library(ies): 69 entry(ies)

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Expressed library(ies): 69 entry(ies)

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               ute (16.3325)
               

               
               amn (12.5313)
               

               
               cly (11.2197)
               

               
               csp (5.64152)
               

               
               jca (4.90028)
               

               
               lnt (4.69617)
               

               
               cag (4.68703)
               

               
               hyp (3.71376)
               

               
               eru (3.48139)
               

               
               cov (2.90736)
               

               
               cga (2.79096)
               

               
               ill (2.63389)
               

               
               pty (2.28343)
               

               
               ton (2.2815)
               

               
               fhi (2.20451)
               

               
               nco (1.94081)
               

               
               jej (1.87951)
               

               
               mcp (1.70648)
               

               
               pgl (1.4218)
               

               
               eep (1.3482)
               

               
               sag (1.27901)
               

               
               hlv (1.11405)
               

               
               fbs (1.05208)
               

               
               cut (1.01954)
               

               
               fli (1.0144)
               

               
               fcc (0.988924)
               

               
               nlu (0.958405)
               

               
               pla (0.935704)
               

               
               fty (0.879198)
               

               
               nje (0.8296)
               

               
               fce (0.814775)
               

               
               nbm (0.794597)
               

               
               eje (0.79067)
               

               
               col (0.780031)
               

               
               elu (0.770713)
               

               
               ese (0.759013)
               

               
               sin (0.69979)
               

               
               med (0.697512)
               

               
               rec (0.692281)
               

               
               mas (0.630915)
               

               
               sme (0.610874)
               

               
               ebs (0.591506)
               

               
               spc (0.566829)
               

               
               nep (0.551775)
               

               
               nca (0.547495)
               

               
               nmm (0.531209)
               

               
               duo (0.518403)
               

               
               eye (0.511509)
               

               
               cki (0.495704)
               

               
               ecc (0.46014)
               

               
               ece (0.45861)
               

               
               eli (0.455443)
               

               
               cst (0.420109)
               

               
               hea (0.408998)
               

               
               ssp (0.406559)
               

               
               vin (0.332557)
               

               
               mga (0.32041)
               

               
               fat (0.294855)
               

               
               thg (0.253582)
               

               
               cje (0.165235)
               

               
               ctl (0.153069)
               

               
               cli (0.152812)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               che (0.136314)
               

               
               lyg (0.133103)
               

               
               clu (0.119646)

Expressed library(ies): 69 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ute (16.3325)
               

               
               amn (12.5313)
               

               
               cly (11.2197)
               

               
               csp (5.64152)
               

               
               jca (4.90028)
               

               
               lnt (4.69617)
               

               
               cag (4.68703)
               

               
               hyp (3.71376)
               

               
               eru (3.48139)
               

               
               cov (2.90736)
               

               
               cga (2.79096)
               

               
               ill (2.63389)
               

               
               pty (2.28343)
               

               
               ton (2.2815)
               

               
               fhi (2.20451)
               

               
               nco (1.94081)
               

               
               jej (1.87951)
               

               
               mcp (1.70648)
               

               
               pgl (1.4218)
               

               
               eep (1.3482)
               

               
               sag (1.27901)
               

               
               hlv (1.11405)
               

               
               fbs (1.05208)
               

               
               cut (1.01954)
               

               
               fli (1.0144)
               

               
               fcc (0.988924)
               

               
               nlu (0.958405)
               

               
               pla (0.935704)
               

               
               fty (0.879198)
               

               
               nje (0.8296)
               

               
               fce (0.814775)
               

               
               nbm (0.794597)
               

               
               eje (0.79067)
               

               
               col (0.780031)
               

               
               elu (0.770713)
               

               
               ese (0.759013)
               

               
               sin (0.69979)
               

               
               med (0.697512)
               

               
               rec (0.692281)
               

               
               mas (0.630915)
               

               
               sme (0.610874)
               

               
               ebs (0.591506)
               

               
               spc (0.566829)
               

               
               nep (0.551775)
               

               
               nca (0.547495)
               

               
               nmm (0.531209)
               

               
               duo (0.518403)
               

               
               eye (0.511509)
               

               
               cki (0.495704)
               

               
               ecc (0.46014)
               

               
               ece (0.45861)
               

               
               eli (0.455443)
               

               
               cst (0.420109)
               

               
               hea (0.408998)
               

               
               ssp (0.406559)
               

               
               vin (0.332557)
               

               
               mga (0.32041)
               

               
               fat (0.294855)
               

               
               thg (0.253582)
               

               
               cje (0.165235)
               

               
               ctl (0.153069)
               

               
               cli (0.152812)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               che (0.136314)
               

               
               lyg (0.133103)
               

               
               clu (0.119646)

	39-324, gnl\|bosTau2\|chr13 (27247396-27247689)
	39-324, gnl\|Hg17\|chr20 (23566567-23566255)
	39-324, gnl\|Mm7\|chr2 (148616289-148616008)

	ute (16.3325)
	amn (12.5313)
	cly (11.2197)
	csp (5.64152)
	jca (4.90028)
	lnt (4.69617)
	cag (4.68703)
	hyp (3.71376)
	eru (3.48139)
	cov (2.90736)
	cga (2.79096)
	ill (2.63389)
	pty (2.28343)
	ton (2.2815)
	fhi (2.20451)
	nco (1.94081)
	jej (1.87951)
	mcp (1.70648)
	pgl (1.4218)
	eep (1.3482)
	sag (1.27901)
	hlv (1.11405)
	fbs (1.05208)
	cut (1.01954)
	fli (1.0144)
	fcc (0.988924)
	nlu (0.958405)
	pla (0.935704)
	fty (0.879198)
	nje (0.8296)
	fce (0.814775)
	nbm (0.794597)
	eje (0.79067)
	col (0.780031)
	elu (0.770713)
	ese (0.759013)
	sin (0.69979)
	med (0.697512)
	rec (0.692281)
	mas (0.630915)
	sme (0.610874)
	ebs (0.591506)
	spc (0.566829)
	nep (0.551775)
	nca (0.547495)
	nmm (0.531209)
	duo (0.518403)
	eye (0.511509)
	cki (0.495704)
	ecc (0.46014)
	ece (0.45861)
	eli (0.455443)
	cst (0.420109)
	hea (0.408998)
	ssp (0.406559)
	vin (0.332557)
	mga (0.32041)
	fat (0.294855)
	thg (0.253582)
	cje (0.165235)
	ctl (0.153069)
	cli (0.152812)
	lun (0.150489)
	bfe (0.149858)
	spl (0.143184)
	csk (0.140746)
	che (0.136314)
	lyg (0.133103)
	clu (0.119646)