Ss1.1-rjca10c_j9.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCGCCGAGAGAAGCCTCGCTTCCCCTCCCGCGGCGACCAGGCCCCAGCCGGAGAGCAGC AGGTGTAGCCACCCGCCCAGAAACCCGACGCCATGTGTGACGAAGACGAGACCACCGCCC TTGTGTGCGACAATGGCTCCGGCCTGGTGAAAGCCGGCTTCGCCGGTGACGACGCCCCTA GGGCTGTGTTCCCGTCCATCGTGGGCCGCCCTCGCCACCAGGGCGTCATGGTGGGTATGG GTCAGAAAGATTCCTACGTGGGCGACGAGGCTCAGAGCAAGAGAGGTATCCTGACCCTCA AGTACCCCATCGAGCACGGCATCATCACCAACTGGGACGACATGGAGAAGATCTGGCACC ACACCTTCTACAACGAGCTCCGGGTGGCCCCCGAGGAGCACCCCACCCTGCTCACCGAGG CCCCCCTCAACCCCAAGGCCAACCGCGAGAAGATGACTCAGATCATGTTTGAGACCTTCA ACGTGCCCGCCATGTACGTGGCCATCCAGGCAGTGCTGTCCCTCTACGCCTCCGGCCGTA CCACCGGCATCGTGCTCGACTCTGGCGACGGCGTCACCCACAACGTGCCCATCTATGAGG GCTACGCGCTGCCACACGCCATCATGCGCCTGGACCTGGCCGGCCGCGATCTCACCGACT ACCTGATGAAGATCCTCACCGAGCGTGGCTACTCCTTCGTGACCACAGCTGAGCGCGAGA TCGTGCGCGACATCAAGGAGAAGCTGTGCTACGTGGCCCTGGACTTCGAGAACGAGATGG CCACCGCCGCCTCCTCCTCCTCCCTGGAGAAGAGCTACGAGCTGCCAGACGGCCAGGTCA TCACCATCGGCAACGAGCGCTTCCGCTGCCCGGAAACGCTCTTCCAGCCCTCCTTCATCG GCATGGAGTCGGCGGGCATCCATGAGACTACCTACAACAGCATCATGAAGTGCGACATCG ATATCAGGAAGGACCTGTACGCCAACAATGTCATGTCAGGGGGCACCACCATGTACCCGG GCATCGCTGACCGCATGCAGAAGGAGATCACCGCTCTGGCCCCCAGCACCATGAAGATCA AGATCATCGCCCCGCCCGAGCGCAAGTACTCCGTGTGGATCGGCGGCTCCATCCTGGCCT CGCTGTCCACCTTCCAGCAGATGTGGATCACCAAGCAGGAGTACGACGAGGCCGGCCCAT CTATCGTCCACCGCAAATGCTTCTAAACCCCATTCCAACAGCTGCGACTTCTCCTCAGGA CGACGAATCTGCTCAAGGTGCAGTGGCTGACCTCGAGCCACCAAGCGGCAACTGCTCTCC CACCGCCTGCGTTGCTGCTGCCCAAACCGACACAATGTTTATAACGTGTACATACATTAA CTTATTTACCTCATTTTGTTATTTTTAAAACGAAGCCCTGTGGAAGGAAATGGAAAACTT GAAGCATTAAACTCAGCCATTCTGTTATGCTGCGTAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCGCCGAGAGAAGCCTCGCTTCCCCTCCCGCGGCGACCAGGCCCCAGCCGGAGAGCAGC AGGTGTAGCCACCCGCCCAGAAACCCGACGCCATGTGTGACGAAGACGAGACCACCGCCC TTGTGTGCGACAATGGCTCCGGCCTGGTGAAAGCCGGCTTCGCCGGTGACGACGCCCCTA GGGCTGTGTTCCCGTCCATCGTGGGCCGCCCTCGCCACCAGGGCGTCATGGTGGGTATGG GTCAGAAAGATTCCTACGTGGGCGACGAGGCTCAGAGCAAGAGAGGTATCCTGACCCTCA AGTACCCCATCGAGCACGGCATCATCACCAACTGGGACGACATGGAGAAGATCTGGCACC ACACCTTCTACAACGAGCTCCGGGTGGCCCCCGAGGAGCACCCCACCCTGCTCACCGAGG CCCCCCTCAACCCCAAGGCCAACCGCGAGAAGATGACTCAGATCATGTTTGAGACCTTCA ACGTGCCCGCCATGTACGTGGCCATCCAGGCAGTGCTGTCCCTCTACGCCTCCGGCCGTA CCACCGGCATCGTGCTCGACTCTGGCGACGGCGTCACCCACAACGTGCCCATCTATGAGG GCTACGCGCTGCCACACGCCATCATGCGCCTGGACCTGGCCGGCCGCGATCTCACCGACT ACCTGATGAAGATCCTCACCGAGCGTGGCTACTCCTTCGTGACCACAGCTGAGCGCGAGA TCGTGCGCGACATCAAGGAGAAGCTGTGCTACGTGGCCCTGGACTTCGAGAACGAGATGG CCACCGCCGCCTCCTCCTCCTCCCTGGAGAAGAGCTACGAGCTGCCAGACGGCCAGGTCA TCACCATCGGCAACGAGCGCTTCCGCTGCCCGGAAACGCTCTTCCAGCCCTCCTTCATCG GCATGGAGTCGGCGGGCATCCATGAGACTACCTACAACAGCATCATGAAGTGCGACATCG ATATCAGGAAGGACCTGTACGCCAACAATGTCATGTCAGGGGGCACCACCATGTACCCGG GCATCGCTGACCGCATGCAGAAGGAGATCACCGCTCTGGCCCCCAGCACCATGAAGATCA AGATCATCGCCCCGCCCGAGCGCAAGTACTCCGTGTGGATCGGCGGCTCCATCCTGGCCT CGCTGTCCACCTTCCAGCAGATGTGGATCACCAAGCAGGAGTACGACGAGGCCGGCCCAT CTATCGTCCACCGCAAATGCTTCTAAACCCCATTCCAACAGCTGCGACTTCTCCTCAGGA CGACGAATCTGCTCAAGGTGCAGTGGCTGACCTCGAGCCACCAAGCGGCAACTGCTCTCC CACCGCCTGCGTTGCTGCTGCCCAAACCGACACAATGTTTATAACGTGTACATACATTAA CTTATTTACCTCATTTTGTTATTTTTAAAACGAAGCCCTGTGGAAGGAAATGGAAAACTT GAAGCATTAAACTCAGCCATTCTGTTATGCTGCGTAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 220-339, - strand, RNAz p=0.626319 | |
| 706-818, + strand, RNAz p=0.849393 | |
| 784-908, + strand, RNAz p=0.802462 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 220-339, - strand, RNAz p=0.626319 | |
| 706-818, + strand, RNAz p=0.849393 | |
| 784-908, + strand, RNAz p=0.802462 |
| Aligned organism(s): 59 entry(ies) | More info |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
| 220-547, gnl|bosTau2|chr10 (19086812-19086485) | |
| 220-547, gnl|canFam2|chr30 (5506751-5507104) | |
| 220-547, gnl|dasNov1|scaffold_19757 (44022-43669) | |
| 220-547, gnl|echTel1|scaffold_318944 (3386-3034) | |
| 220-547, gnl|fr1|chrUn (63305598-63305946) | |
| 220-547, gnl|galGal2|chr5 (29145784-29145442) | |
| 220-547, gnl|hg17|chr15 (32872717-32873069) | |
| 220-547, gnl|Hg17|chr15 (32873064-32872737) | |
| 220-547, gnl|loxAfr1|scaffold_10024 (29037-28725) | |
| 220-547, gnl|mm7|chr2 (113791108-113791460) | |
| 220-547, gnl|Mm7|chr2 (113791455-113791128) | |
| 220-547, gnl|monDom2|scaffold_12 (9572456-9572112) | |
| 220-547, gnl|oryCun1|scaffold_179293 (445-93) | |
| 220-547, gnl|panTro1|chr16 (32653340-32653692) | |
| 220-547, gnl|rheMac2|chr7 (13132136-13132488) | |
| 220-547, gnl|rn3|chr3 (99800397-99800748) | |
| 220-547, gnl|tetNig1|chr10 (7897220-7896871) | |
| 220-547, gnl|xenTro1|scaffold_199 (677786-677445) | |
| 705-908, gnl|bosTau2|chr26 (5412437-5412234) | |
| 705-908, gnl|Hg17|chr10 (90689439-90689236) | |
| 705-908, gnl|Mm7|chr19 (33946340-33946137) | |
| 706-901, gnl|bosTau2|chr10 (19085485-19085290) | |
| 706-901, gnl|canFam2|chr30 (5505628-5505833) | |
| 706-901, gnl|danRer3|chr14 (32886032-32885827) | |
| 706-901, gnl|dasNov1|scaffold_1043 (13637-13827) | |
| 706-901, gnl|echTel1|scaffold_318944 (4473-4268) | |
| 706-901, gnl|fr1|chrUn (63305079-63305280) | |
| 706-901, gnl|galGal2|chr5 (29146862-29146670) | |
| 706-901, gnl|hg17|chr15 (32871574-32871779) | |
| 706-901, gnl|Hg17|chr15 (32871777-32871582) | |
| 706-901, gnl|loxAfr1|scaffold_10024 (29791-29599) | |
| 706-901, gnl|mm7|chr2 (113790000-113790205) | |
| 706-901, gnl|Mm7|chr2 (113790203-113790008) | |
| 706-901, gnl|monDom2|scaffold_12 (9573880-9573675) | |
| 706-901, gnl|oryCun1|scaffold_214311 (43778-43970) | |
| 706-901, gnl|panTro1|chr16 (32652195-32652400) | |
| 706-901, gnl|rheMac2|chr7 (13130989-13131194) | |
| 706-901, gnl|rn3|chr3 (99799298-99799503) | |
| 706-901, gnl|tetNig1|chr10 (7897776-7897575) | |
| 706-901, gnl|xenTro1|scaffold_199 (679801-679596) | |
| 1081-1226, gnl|bosTau2|chr10 (19083781-19083636) | |
| 1081-1226, gnl|canFam2|chr30 (5503985-5504181) | |
| 1081-1226, gnl|danRer3|chr14 (32888947-32888749) | |
| 1081-1226, gnl|dasNov1|scaffold_19757 (46926-46730) | |
| 1081-1226, gnl|echTel1|scaffold_318944 (6298-6097) | |
| 1081-1226, gnl|fr1|chrUn (63304276-63304437) | |
| 1081-1226, gnl|galGal2|chr5 (29148742-29148542) | |
| 1081-1226, gnl|hg17|chr15 (32869867-32870064) | |
| 1081-1226, gnl|Hg17|chr15 (32870050-32869905) | |
| 1081-1226, gnl|loxAfr1|scaffold_10024 (30384-30190) | |
| 1081-1226, gnl|mm7|chr2 (113788269-113788465) | |
| 1081-1226, gnl|Mm7|chr2 (113788451-113788306) | |
| 1081-1226, gnl|monDom2|scaffold_12 (9576524-9576327) | |
| 1081-1226, gnl|oryCun1|scaffold_179293 (3266-3069) | |
| 1081-1226, gnl|panTro1|chr16 (32650491-32650688) | |
| 1081-1226, gnl|rheMac2|chr7 (13129319-13129512) | |
| 1081-1226, gnl|rn3|chr3 (99797588-99797772) | |
| 1081-1226, gnl|tetNig1|chr10 (7898617-7898430) | |
| 1081-1226, gnl|xenTro1|scaffold_199 (681082-680896) |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 220-547, gnl|bosTau2|chr10 (19086812-19086485) | |
| 220-547, gnl|canFam2|chr30 (5506751-5507104) | |
| 220-547, gnl|dasNov1|scaffold_19757 (44022-43669) | |
| 220-547, gnl|echTel1|scaffold_318944 (3386-3034) | |
| 220-547, gnl|fr1|chrUn (63305598-63305946) | |
| 220-547, gnl|galGal2|chr5 (29145784-29145442) | |
| 220-547, gnl|hg17|chr15 (32872717-32873069) | |
| 220-547, gnl|Hg17|chr15 (32873064-32872737) | |
| 220-547, gnl|loxAfr1|scaffold_10024 (29037-28725) | |
| 220-547, gnl|mm7|chr2 (113791108-113791460) | |
| 220-547, gnl|Mm7|chr2 (113791455-113791128) | |
| 220-547, gnl|monDom2|scaffold_12 (9572456-9572112) | |
| 220-547, gnl|oryCun1|scaffold_179293 (445-93) | |
| 220-547, gnl|panTro1|chr16 (32653340-32653692) | |
| 220-547, gnl|rheMac2|chr7 (13132136-13132488) | |
| 220-547, gnl|rn3|chr3 (99800397-99800748) | |
| 220-547, gnl|tetNig1|chr10 (7897220-7896871) | |
| 220-547, gnl|xenTro1|scaffold_199 (677786-677445) | |
| 705-908, gnl|bosTau2|chr26 (5412437-5412234) | |
| 705-908, gnl|Hg17|chr10 (90689439-90689236) | |
| 705-908, gnl|Mm7|chr19 (33946340-33946137) | |
| 706-901, gnl|bosTau2|chr10 (19085485-19085290) | |
| 706-901, gnl|canFam2|chr30 (5505628-5505833) | |
| 706-901, gnl|danRer3|chr14 (32886032-32885827) | |
| 706-901, gnl|dasNov1|scaffold_1043 (13637-13827) | |
| 706-901, gnl|echTel1|scaffold_318944 (4473-4268) | |
| 706-901, gnl|fr1|chrUn (63305079-63305280) | |
| 706-901, gnl|galGal2|chr5 (29146862-29146670) | |
| 706-901, gnl|hg17|chr15 (32871574-32871779) | |
| 706-901, gnl|Hg17|chr15 (32871777-32871582) | |
| 706-901, gnl|loxAfr1|scaffold_10024 (29791-29599) | |
| 706-901, gnl|mm7|chr2 (113790000-113790205) | |
| 706-901, gnl|Mm7|chr2 (113790203-113790008) | |
| 706-901, gnl|monDom2|scaffold_12 (9573880-9573675) | |
| 706-901, gnl|oryCun1|scaffold_214311 (43778-43970) | |
| 706-901, gnl|panTro1|chr16 (32652195-32652400) | |
| 706-901, gnl|rheMac2|chr7 (13130989-13131194) | |
| 706-901, gnl|rn3|chr3 (99799298-99799503) | |
| 706-901, gnl|tetNig1|chr10 (7897776-7897575) | |
| 706-901, gnl|xenTro1|scaffold_199 (679801-679596) | |
| 1081-1226, gnl|bosTau2|chr10 (19083781-19083636) | |
| 1081-1226, gnl|canFam2|chr30 (5503985-5504181) | |
| 1081-1226, gnl|danRer3|chr14 (32888947-32888749) | |
| 1081-1226, gnl|dasNov1|scaffold_19757 (46926-46730) | |
| 1081-1226, gnl|echTel1|scaffold_318944 (6298-6097) | |
| 1081-1226, gnl|fr1|chrUn (63304276-63304437) | |
| 1081-1226, gnl|galGal2|chr5 (29148742-29148542) | |
| 1081-1226, gnl|hg17|chr15 (32869867-32870064) | |
| 1081-1226, gnl|Hg17|chr15 (32870050-32869905) | |
| 1081-1226, gnl|loxAfr1|scaffold_10024 (30384-30190) | |
| 1081-1226, gnl|mm7|chr2 (113788269-113788465) | |
| 1081-1226, gnl|Mm7|chr2 (113788451-113788306) | |
| 1081-1226, gnl|monDom2|scaffold_12 (9576524-9576327) | |
| 1081-1226, gnl|oryCun1|scaffold_179293 (3266-3069) | |
| 1081-1226, gnl|panTro1|chr16 (32650491-32650688) | |
| 1081-1226, gnl|rheMac2|chr7 (13129319-13129512) | |
| 1081-1226, gnl|rn3|chr3 (99797588-99797772) | |
| 1081-1226, gnl|tetNig1|chr10 (7898617-7898430) | |
| 1081-1226, gnl|xenTro1|scaffold_199 (681082-680896) |
| Expressed library(ies): 32 entry(ies) | More info |
| Expressed library(ies): 32 entry(ies) | Help | Less info |
| nms (62.0188) | |
| mas (56.9926) | |
| hlv (18.2426) | |
| nep (14.5301) | |
| ssp (13.0099) | |
| ton (12.1095) | |
| sme (8.55223) | |
| ldo (8.53623) | |
| isp (8.42105) | |
| ste (7.84208) | |
| tbr (6.93802) | |
| vin (5.65348) | |
| ese (5.18659) | |
| che (3.81679) | |
| hea (3.47648) | |
| ctl (3.21445) | |
| nca (2.87435) | |
| bfe (2.39772) | |
| pty (2.28343) | |
| jca (2.2792) | |
| eru (2.16086) | |
| col (1.75507) | |
| pro (0.512033) | |
| bla (0.248694) | |
| fli (0.202881) | |
| fhi (0.169578) | |
| cki (0.165235) | |
| cag (0.151194) | |
| lin (0.145603) | |
| lnt (0.142308) | |
| ret (0.128733) | |
| clu (0.119646) |
| Expressed library(ies): 32 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nms (62.0188) | |
| mas (56.9926) | |
| hlv (18.2426) | |
| nep (14.5301) | |
| ssp (13.0099) | |
| ton (12.1095) | |
| sme (8.55223) | |
| ldo (8.53623) | |
| isp (8.42105) | |
| ste (7.84208) | |
| tbr (6.93802) | |
| vin (5.65348) | |
| ese (5.18659) | |
| che (3.81679) | |
| hea (3.47648) | |
| ctl (3.21445) | |
| nca (2.87435) | |
| bfe (2.39772) | |
| pty (2.28343) | |
| jca (2.2792) | |
| eru (2.16086) | |
| col (1.75507) | |
| pro (0.512033) | |
| bla (0.248694) | |
| fli (0.202881) | |
| fhi (0.169578) | |
| cki (0.165235) | |
| cag (0.151194) | |
| lin (0.145603) | |
| lnt (0.142308) | |
| ret (0.128733) | |
| clu (0.119646) |