Ss1.1-rjca10c_k10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGTGCCGCAAGGCCGACACGGGCAAGATGTACGCCATGAAGTGTCTGGACAAGAAGCGC ATCAAGATGAAGCAGGGGGAGACGCTGGCCCTGAACGAGCGCATCATGCTGTCCCTCGTC AGCACCGGGGACTGTCCGTTCATCGTCTGCATGTCCTACGCGTTCCACACGCCGGACAAG CTCAGCTTCATCCTCGATCTCATGAACGGCGGGGACCTGCACTACCACCTGTCCCAGCAC GGGGTCTTCTCCGAGGCCGACATGCGCTTCTACGCGGCCGAGATCATCCTGGGCCTGGAG CACATGCACAACCGCTTCGTCGTCTACCGGGACCTGAAGCCGGCCAACATCCTCCTGGAC GAGCACGGCCACGTGCGCATCTCAGACCTAGGCCTGGCCTGCGACTTCTCCAAGAAGAAG CCCCACGCCAGCGTGGGCACCCATGGGTACATGGCCCCCGAGGTCCTGCAGAAGGGCGTG GCCTACGACAGCAGCGCCGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGCTGCTGCGA GGGCACAGCCCTTTCCGGCAGCACAAGACCAAAGACAAGCATGAGATCGACAGAATGACA TTGACTATGGCTGTGGAGCTGCCGGACTCCTTCTCCCCCGAGCTCCGCTCCTTGCTGGAG GGGCTGCTGCAGAGGGACGTCAACCGGAGACTCGGCTGCCTGGGCCGAGGGGCCCAGGAG GTGAAGGAGAGCCCCTTCTTCCGTTCCCTGGACTGGCAGATGGTCTTCCTGCAGAAGTAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGTGCCGCAAGGCCGACACGGGCAAGATGTACGCCATGAAGTGTCTGGACAAGAAGCGC ATCAAGATGAAGCAGGGGGAGACGCTGGCCCTGAACGAGCGCATCATGCTGTCCCTCGTC AGCACCGGGGACTGTCCGTTCATCGTCTGCATGTCCTACGCGTTCCACACGCCGGACAAG CTCAGCTTCATCCTCGATCTCATGAACGGCGGGGACCTGCACTACCACCTGTCCCAGCAC GGGGTCTTCTCCGAGGCCGACATGCGCTTCTACGCGGCCGAGATCATCCTGGGCCTGGAG CACATGCACAACCGCTTCGTCGTCTACCGGGACCTGAAGCCGGCCAACATCCTCCTGGAC GAGCACGGCCACGTGCGCATCTCAGACCTAGGCCTGGCCTGCGACTTCTCCAAGAAGAAG CCCCACGCCAGCGTGGGCACCCATGGGTACATGGCCCCCGAGGTCCTGCAGAAGGGCGTG GCCTACGACAGCAGCGCCGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGCTGCTGCGA GGGCACAGCCCTTTCCGGCAGCACAAGACCAAAGACAAGCATGAGATCGACAGAATGACA TTGACTATGGCTGTGGAGCTGCCGGACTCCTTCTCCCCCGAGCTCCGCTCCTTGCTGGAG GGGCTGCTGCAGAGGGACGTCAACCGGAGACTCGGCTGCCTGGGCCGAGGGGCCCAGGAG GTGAAGGAGAGCCCCTTCTTCCGTTCCCTGGACTGGCAGATGGTCTTCCTGCAGAAGTAC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 58 entry(ies) | More info |
| Aligned organism(s): 58 entry(ies) | Help | Less info |
| 30-130, gnl|bosTau2|chr29 (36336374-36336274) | |
| 30-130, gnl|canFam2|chr18 (53179377-53179267) | |
| 30-130, gnl|danRer3|chr19 (34952283-34952177) | |
| 30-130, gnl|dasNov1|scaffold_110668 (1671-1564) | |
| 30-130, gnl|echTel1|scaffold_285172 (4014-4121) | |
| 30-130, gnl|fr1|chrUn (227243937-227244047) | |
| 30-130, gnl|galGal2|chrUn (123231782-123231890) | |
| 30-130, gnl|hg17|chr11 (66805504-66805614) | |
| 30-130, gnl|Hg17|chr11 (66805506-66805606) | |
| 30-130, gnl|loxAfr1|scaffold_3648 (57110-57004) | |
| 30-130, gnl|mm7|chr19 (4185681-4185571) | |
| 30-130, gnl|Mm7|chr19 (4185677-4185577) | |
| 30-130, gnl|oryCun1|scaffold_139881 (14972-15079) | |
| 30-130, gnl|panTro1|chr9 (68063303-68063413) | |
| 30-130, gnl|rheMac2|chr14 (7181838-7181728) | |
| 30-130, gnl|rn3|chr1 (207030596-207030486) | |
| 30-130, gnl|tetNig1|chrUn_random (422064-421954) | |
| 30-130, gnl|xenTro1|scaffold_9 (1260864-1260970) | |
| 208-339, gnl|bosTau2|chr17 (40263612-40263481) | |
| 208-339, gnl|Hg17|chr22 (24408057-24408188) | |
| 208-339, gnl|Mm7|chr5 (112131552-112131421) | |
| 435-543, gnl|bosTau2|chr17 (40255816-40255708) | |
| 435-543, gnl|canFam2|chr26 (22515189-22515320) | |
| 435-543, gnl|danRer3|chr19 (34938962-34938839) | |
| 435-543, gnl|dasNov1|scaffold_48395 (2621-2490) | |
| 435-543, gnl|echTel1|scaffold_285777 (55335-55463) | |
| 435-543, gnl|fr1|chrUn (227246863-227246987) | |
| 435-543, gnl|galGal2|chr15 (7000204-7000335) | |
| 435-543, gnl|hg17|chr22 (24415614-24415746) | |
| 435-543, gnl|Hg17|chr22 (24415628-24415736) | |
| 435-543, gnl|loxAfr1|scaffold_67079 (2811-2680) | |
| 435-543, gnl|mm7|chr5 (112124334-112124204) | |
| 435-543, gnl|Mm7|chr5 (112124319-112124211) | |
| 435-543, gnl|monDom2|scaffold_151 (491131-491258) | |
| 435-543, gnl|oryCun1|scaffold_167317 (3964-4083) | |
| 435-543, gnl|panTro1|chr23 (24498145-24498277) | |
| 435-543, gnl|rheMac2|chr10 (69517201-69517333) | |
| 435-543, gnl|rn3|chrUn (51698595-51698464) | |
| 435-543, gnl|tetNig1|chrUn_random (419680-419567) | |
| 435-543, gnl|xenTro1|scaffold_9 (1276248-1276363) | |
| 609-711, gnl|bosTau2|chr29 (36334519-36334417) | |
| 609-711, gnl|canFam2|chr18 (53177792-53177638) | |
| 609-711, gnl|danRer3|chr19 (34919053-34918922) | |
| 609-711, gnl|dasNov1|scaffold_151521 (6967-7118) | |
| 609-711, gnl|echTel1|scaffold_285172 (5478-5610) | |
| 609-711, gnl|fr1|chrUn (227252131-227252294) | |
| 609-711, gnl|galGal2|chr15 (7002292-7002433) | |
| 609-711, gnl|hg17|chr11 (66807131-66807286) | |
| 609-711, gnl|Hg17|chr11 (66807174-66807276) | |
| 609-711, gnl|loxAfr1|scaffold_21255 (32378-32513) | |
| 609-711, gnl|mm7|chr19 (4184266-4184110) | |
| 609-711, gnl|Mm7|chr19 (4184220-4184118) | |
| 609-711, gnl|oryCun1|scaffold_167317 (4343-4478) | |
| 609-711, gnl|panTro1|chr9 (68064927-68065082) | |
| 609-711, gnl|rheMac2|chr14 (7180222-7180067) | |
| 609-711, gnl|rn3|chr1 (207029124-207028960) | |
| 609-711, gnl|tetNig1|chrUn_random (415324-415174) | |
| 609-711, gnl|xenTro1|scaffold_9 (1281370-1281491) |
| Aligned organism(s): 58 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 30-130, gnl|bosTau2|chr29 (36336374-36336274) | |
| 30-130, gnl|canFam2|chr18 (53179377-53179267) | |
| 30-130, gnl|danRer3|chr19 (34952283-34952177) | |
| 30-130, gnl|dasNov1|scaffold_110668 (1671-1564) | |
| 30-130, gnl|echTel1|scaffold_285172 (4014-4121) | |
| 30-130, gnl|fr1|chrUn (227243937-227244047) | |
| 30-130, gnl|galGal2|chrUn (123231782-123231890) | |
| 30-130, gnl|hg17|chr11 (66805504-66805614) | |
| 30-130, gnl|Hg17|chr11 (66805506-66805606) | |
| 30-130, gnl|loxAfr1|scaffold_3648 (57110-57004) | |
| 30-130, gnl|mm7|chr19 (4185681-4185571) | |
| 30-130, gnl|Mm7|chr19 (4185677-4185577) | |
| 30-130, gnl|oryCun1|scaffold_139881 (14972-15079) | |
| 30-130, gnl|panTro1|chr9 (68063303-68063413) | |
| 30-130, gnl|rheMac2|chr14 (7181838-7181728) | |
| 30-130, gnl|rn3|chr1 (207030596-207030486) | |
| 30-130, gnl|tetNig1|chrUn_random (422064-421954) | |
| 30-130, gnl|xenTro1|scaffold_9 (1260864-1260970) | |
| 208-339, gnl|bosTau2|chr17 (40263612-40263481) | |
| 208-339, gnl|Hg17|chr22 (24408057-24408188) | |
| 208-339, gnl|Mm7|chr5 (112131552-112131421) | |
| 435-543, gnl|bosTau2|chr17 (40255816-40255708) | |
| 435-543, gnl|canFam2|chr26 (22515189-22515320) | |
| 435-543, gnl|danRer3|chr19 (34938962-34938839) | |
| 435-543, gnl|dasNov1|scaffold_48395 (2621-2490) | |
| 435-543, gnl|echTel1|scaffold_285777 (55335-55463) | |
| 435-543, gnl|fr1|chrUn (227246863-227246987) | |
| 435-543, gnl|galGal2|chr15 (7000204-7000335) | |
| 435-543, gnl|hg17|chr22 (24415614-24415746) | |
| 435-543, gnl|Hg17|chr22 (24415628-24415736) | |
| 435-543, gnl|loxAfr1|scaffold_67079 (2811-2680) | |
| 435-543, gnl|mm7|chr5 (112124334-112124204) | |
| 435-543, gnl|Mm7|chr5 (112124319-112124211) | |
| 435-543, gnl|monDom2|scaffold_151 (491131-491258) | |
| 435-543, gnl|oryCun1|scaffold_167317 (3964-4083) | |
| 435-543, gnl|panTro1|chr23 (24498145-24498277) | |
| 435-543, gnl|rheMac2|chr10 (69517201-69517333) | |
| 435-543, gnl|rn3|chrUn (51698595-51698464) | |
| 435-543, gnl|tetNig1|chrUn_random (419680-419567) | |
| 435-543, gnl|xenTro1|scaffold_9 (1276248-1276363) | |
| 609-711, gnl|bosTau2|chr29 (36334519-36334417) | |
| 609-711, gnl|canFam2|chr18 (53177792-53177638) | |
| 609-711, gnl|danRer3|chr19 (34919053-34918922) | |
| 609-711, gnl|dasNov1|scaffold_151521 (6967-7118) | |
| 609-711, gnl|echTel1|scaffold_285172 (5478-5610) | |
| 609-711, gnl|fr1|chrUn (227252131-227252294) | |
| 609-711, gnl|galGal2|chr15 (7002292-7002433) | |
| 609-711, gnl|hg17|chr11 (66807131-66807286) | |
| 609-711, gnl|Hg17|chr11 (66807174-66807276) | |
| 609-711, gnl|loxAfr1|scaffold_21255 (32378-32513) | |
| 609-711, gnl|mm7|chr19 (4184266-4184110) | |
| 609-711, gnl|Mm7|chr19 (4184220-4184118) | |
| 609-711, gnl|oryCun1|scaffold_167317 (4343-4478) | |
| 609-711, gnl|panTro1|chr9 (68064927-68065082) | |
| 609-711, gnl|rheMac2|chr14 (7180222-7180067) | |
| 609-711, gnl|rn3|chr1 (207029124-207028960) | |
| 609-711, gnl|tetNig1|chrUn_random (415324-415174) | |
| 609-711, gnl|xenTro1|scaffold_9 (1281370-1281491) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| csp (0.161186) | |
| pla (0.133672) | |
| jca (0.11396) |