Non-Coding RNA Search

Ss1.1-rjca10c_l9.5

Sequence:


               
               GCTGTGCTGCTGCCCATCCTGGGAACCTCGTGGCTCTTTGGTGTGCTTGCTGTCAACAGT
GAGGCCGTCGTCTTCCAGTACATGTTTGCCATACTCAACTCCTTACAGGGATTTTTCATC
TTCCTCTTTCATTGTCTCCTGAATTCAGAGGTGAGAGCGGCTTTCAAGCATAAAACCAAA
GTCTGGTCCCTCACGAGCAGCTCCACCCGCCAGGCCAACATGAAGCCCTTCAGCTCCGAC
ATTATGAACGGGACCCGGCCTGGCACAGGCTCCAGCAGGCTCAGCCCCTGGGACAAGAGC
AGCCACTCCGCGCACCGCGTGGACCTGTCCGCTGTGTGAACAGAGAGGCCGCTAACCCGG
CCGGCCTGCCTCTCAGAACCCCTCCACCCCCTGCCAACAAACCGCAAGATACTCTATCTT
CGCCAGCGGGACCCTCACCTCGCTGCTGTCTGAGCCCCCGTGACAGCCCTTCTGGCCCGT
GACCCGCCCCTTGTGACAGAGCCCACCGTTCAGCCTGTAGCCTGATAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGTGCTGCTGCCCATCCTGGGAACCTCGTGGCTCTTTGGTGTGCTTGCTGTCAACAGT
GAGGCCGTCGTCTTCCAGTACATGTTTGCCATACTCAACTCCTTACAGGGATTTTTCATC
TTCCTCTTTCATTGTCTCCTGAATTCAGAGGTGAGAGCGGCTTTCAAGCATAAAACCAAA
GTCTGGTCCCTCACGAGCAGCTCCACCCGCCAGGCCAACATGAAGCCCTTCAGCTCCGAC
ATTATGAACGGGACCCGGCCTGGCACAGGCTCCAGCAGGCTCAGCCCCTGGGACAAGAGC
AGCCACTCCGCGCACCGCGTGGACCTGTCCGCTGTGTGAACAGAGAGGCCGCTAACCCGG
CCGGCCTGCCTCTCAGAACCCCTCCACCCCCTGCCAACAAACCGCAAGATACTCTATCTT
CGCCAGCGGGACCCTCACCTCGCTGCTGTCTGAGCCCCCGTGACAGCCCTTCTGGCCCGT
GACCCGCCCCTTGTGACAGAGCCCACCGTTCAGCCTGTAGCCTGATAC

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-109, gnl|bosTau2|chr17 (24346444-24346336)
               

               
               1-109, gnl|Hg17|chr12 (130145481-130145589)
               

               
               1-109, gnl|Mm7|chr5 (128438530-128438638)
               


               
               244-528, gnl|bosTau2|chr17 (24341991-24341693)
               

               
               244-528, gnl|Hg17|chr12 (130148593-130148878)
               

               
               244-528, gnl|Mm7|chr5 (128440295-128440554)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-109, gnl|bosTau2|chr17 (24346444-24346336)
               

               
               1-109, gnl|Hg17|chr12 (130145481-130145589)
               

               
               1-109, gnl|Mm7|chr5 (128438530-128438638)
               


               
               244-528, gnl|bosTau2|chr17 (24341991-24341693)
               

               
               244-528, gnl|Hg17|chr12 (130148593-130148878)
               

               
               244-528, gnl|Mm7|chr5 (128440295-128440554)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               jca (0.22792)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.22792)

	1-109, gnl\|bosTau2\|chr17 (24346444-24346336)
	1-109, gnl\|Hg17\|chr12 (130145481-130145589)
	1-109, gnl\|Mm7\|chr5 (128438530-128438638)

	244-528, gnl\|bosTau2\|chr17 (24341991-24341693)
	244-528, gnl\|Hg17\|chr12 (130148593-130148878)
	244-528, gnl\|Mm7\|chr5 (128440295-128440554)