Non-Coding RNA Search

Ss1.1-rjca11c_i17.5

Sequence:


               
               TGGATGTAGACGACTTGGGGCTTCCACCTCCACCCCCACCAGGCTTTGGGCCAGAAGAGC
CTAGCTGGATCCCTGATGCATACTTGGAGAAAGTGGTAACGCTGTACCCATACACCGGCC
AGAAGGACAACGAACTCTCCTTCTCTGAGGGCACCGTTATCTGCATCACCCGCCGCTACT
CTGATGGCTGGTGTGAGGGCGTCAGCTCCGAGGGTTCTGGATTCTTCCCTGGGAACTATG
TGGAGCCCAGCTGCTGACAGCCAGGGATCTCTGGGGTGCTGACCCAGGCACTGCCATGAG
CCCCATGCCAGAGCCAGCTCTCGTGAAGCCTGGACTAGACCTGCACACCTCCTGGGGCCA
TGAGCTGTGACTGCCCCTTCCCCACCACCCCGCTGCAGTGGGAAGGCTCTGGGGAGAAGA
AGTACACAGAGCTCTACTGCAGACAGGAAAAGAACTGGAAGCCAAGGAGCTTGGTGATCT
TATCCACGGAGGATGCTTAATGCCGTGCAGGACAGGGTCTCCAGTTGCAAGTGCCAACTT
TGAATAAAACGCGTGATGAGCAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGATGTAGACGACTTGGGGCTTCCACCTCCACCCCCACCAGGCTTTGGGCCAGAAGAGC
CTAGCTGGATCCCTGATGCATACTTGGAGAAAGTGGTAACGCTGTACCCATACACCGGCC
AGAAGGACAACGAACTCTCCTTCTCTGAGGGCACCGTTATCTGCATCACCCGCCGCTACT
CTGATGGCTGGTGTGAGGGCGTCAGCTCCGAGGGTTCTGGATTCTTCCCTGGGAACTATG
TGGAGCCCAGCTGCTGACAGCCAGGGATCTCTGGGGTGCTGACCCAGGCACTGCCATGAG
CCCCATGCCAGAGCCAGCTCTCGTGAAGCCTGGACTAGACCTGCACACCTCCTGGGGCCA
TGAGCTGTGACTGCCCCTTCCCCACCACCCCGCTGCAGTGGGAAGGCTCTGGGGAGAAGA
AGTACACAGAGCTCTACTGCAGACAGGAAAAGAACTGGAAGCCAAGGAGCTTGGTGATCT
TATCCACGGAGGATGCTTAATGCCGTGCAGGACAGGGTCTCCAGTTGCAAGTGCCAACTT
TGAATAAAACGCGTGATGAGCAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61832753|ref|XP_602968.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61832753|ref|XP_602968.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               92-556, gnl|bosTau2|chr19 (30127267-30126807)
               

               
               92-556, gnl|Hg17|chr17 (44654911-44655370)
               

               
               92-556, gnl|Mm7|chr11 (95941917-95941437)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               92-556, gnl|bosTau2|chr19 (30127267-30126807)
               

               
               92-556, gnl|Hg17|chr17 (44654911-44655370)
               

               
               92-556, gnl|Mm7|chr11 (95941917-95941437)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               cag (0.604778)
               

               
               csp (0.483559)
               

               
               cly (0.241284)
               

               
               nms (0.213858)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               nca (0.136874)
               

               
               cov (0.132153)
               

               
               med (0.116252)
               

               
               jca (0.11396)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.604778)
               

               
               csp (0.483559)
               

               
               cly (0.241284)
               

               
               nms (0.213858)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               nca (0.136874)
               

               
               cov (0.132153)
               

               
               med (0.116252)
               

               
               jca (0.11396)

	92-556, gnl\|bosTau2\|chr19 (30127267-30126807)
	92-556, gnl\|Hg17\|chr17 (44654911-44655370)
	92-556, gnl\|Mm7\|chr11 (95941917-95941437)

	cag (0.604778)
	csp (0.483559)
	cly (0.241284)
	nms (0.213858)
	ton (0.1755)
	fbs (0.175346)
	nca (0.136874)
	cov (0.132153)
	med (0.116252)
	jca (0.11396)