Non-Coding RNA Search

Ss1.1-rjca11c_i18.5

Sequence:


               
               CTGGCCACCACCGACAGGAGGCGCCGGGACCTTGGGGGCTCTGCCCCCCTTGCCATCGGC
TTCTCTGTGGCCCTGGGACACCTGCTGGCGATTGACTACACCGGCTGCGGCATTAACCCT
GCCCGGTCCTTCGGCTCCGCGGTGATCACGCACAACTTCCAGGACCACTGGGTTTTCTGG
GTGGGGCCGTTCATCGGAGGAGCCCTGGCCGTGCTCATCTATGACTTCATCCTGGCGCCG
CGCAGCAGCGACCTCACAGACCGCGTGAAGGTGTGGACCAGCGGCCAGGTGGAGGAGTAT
GACCTGGATGGCGACGACATCAACTCCAGGGTGGAGATGAAGCCCAAATAGGAGGGGCCT
GGCCCGGGCATCCATGTGGGGGGGGCGAGGGCGGGCGGAGGGGGGGAGGGGTGATATCCA
CATTGTAGACACTCTGACAAGCTGGCCAAAGTCACTTCCCAAAGATCCGCAGGACCTGCG
CGGTCAAGCCTGATTTGGGGCTGTTGCTCTCACCTTCTTTCTCTTTCTCCGTTTTCTGGC
CTCAGGACTTCCTGAGGACCGAGATTCACCCATCACCCACTCCCTTGACGTCACAGAGGA
GGTGAAAGAGAGGGACCCACCCTGCTAGGTCGTCCCCTCAGAGTGTGACGGGAGGTGTGC
CAGAAAGTCCCCCTCATCCCAAAGTTGCTCACCAACGCACCTGCTGCAGGTGCCTGGGGC
TCCATGGTGATGGCGTTGTGTCTTTGGGCGTCGCCCTCTTTCCTAGAATGAGCACGTGCC
CTCGAAGGTGCTAGGAGCGGGAAGAGGGCCCAGCAGGTGCAGCCGTGGGGGCAGGTGGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGCCACCACCGACAGGAGGCGCCGGGACCTTGGGGGCTCTGCCCCCCTTGCCATCGGC
TTCTCTGTGGCCCTGGGACACCTGCTGGCGATTGACTACACCGGCTGCGGCATTAACCCT
GCCCGGTCCTTCGGCTCCGCGGTGATCACGCACAACTTCCAGGACCACTGGGTTTTCTGG
GTGGGGCCGTTCATCGGAGGAGCCCTGGCCGTGCTCATCTATGACTTCATCCTGGCGCCG
CGCAGCAGCGACCTCACAGACCGCGTGAAGGTGTGGACCAGCGGCCAGGTGGAGGAGTAT
GACCTGGATGGCGACGACATCAACTCCAGGGTGGAGATGAAGCCCAAATAGGAGGGGCCT
GGCCCGGGCATCCATGTGGGGGGGGCGAGGGCGGGCGGAGGGGGGGAGGGGTGATATCCA
CATTGTAGACACTCTGACAAGCTGGCCAAAGTCACTTCCCAAAGATCCGCAGGACCTGCG
CGGTCAAGCCTGATTTGGGGCTGTTGCTCTCACCTTCTTTCTCTTTCTCCGTTTTCTGGC
CTCAGGACTTCCTGAGGACCGAGATTCACCCATCACCCACTCCCTTGACGTCACAGAGGA
GGTGAAAGAGAGGGACCCACCCTGCTAGGTCGTCCCCTCAGAGTGTGACGGGAGGTGTGC
CAGAAAGTCCCCCTCATCCCAAAGTTGCTCACCAACGCACCTGCTGCAGGTGCCTGGGGC
TCCATGGTGATGGCGTTGTGTCTTTGGGCGTCGCCCTCTTTCCTAGAATGAGCACGTGCC
CTCGAAGGTGCTAGGAGCGGGAAGAGGGCCCAGCAGGTGCAGCCGTGGGGGCAGGTGGCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6JSD7_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6JSD7_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               247-438, - strand, RNAz p=0.906985
               

               
               519-633, - strand, RNAz p=0.975702

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               247-438, - strand, RNAz p=0.906985
               

               
               519-633, - strand, RNAz p=0.975702

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               168-840, gnl|bosTau2|chr4 (36123512-36122834)
               

               
               168-840, gnl|Hg17|chr7 (30736301-30736971)
               

               
               168-840, gnl|Mm7|chr6 (55309984-55310613)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               168-840, gnl|bosTau2|chr4 (36123512-36122834)
               

               
               168-840, gnl|Hg17|chr7 (30736301-30736971)
               

               
               168-840, gnl|Mm7|chr6 (55309984-55310613)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               che (0.136314)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.136314)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

	247-438, - strand, RNAz p=0.906985
	519-633, - strand, RNAz p=0.975702

	168-840, gnl\|bosTau2\|chr4 (36123512-36122834)
	168-840, gnl\|Hg17\|chr7 (30736301-30736971)
	168-840, gnl\|Mm7\|chr6 (55309984-55310613)