Ss1.1-rjca12c_a9.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCCTCCCGTCGGTCCTGCTGGGTGATGGGAACCGTGAGTGCGGTCGCCCCCCGGGCCCG CGCCCTCTGGGCCCTCCTCCTGGCCTCTCTTGGCACCGCTGCCGGGCAGCCGCTGGGAGG AGAGTCCGTGTGCACGGCCCAGCCCCTGGCCAAGTATGGCATCACCTTCACGGGCAAGTG GAGCCAGGCGGCCTTCCCCAAGCAGTACCCGCTGTTCCGCCCGCCCGCGCAGTGGTCTGC CCTCCTGGGGGCAGCGCACAGCTCTGACTACAGCCTGTGGAGGAAGGACCAGTATGTCAG CAATGGGCTGAGGGACTTCGTGGAGCGGGGCGAGGCCTGGGCCCTGATGAGGGAGATGGA GGCGGCCGGGGAGAAGCTGCAGAGCGTGCACGGCGTGTTCTCCGCCCCCGCCGTGCCCAG CGGCACCGGGCAGACCTCCACGGAGCTGGAGGTCCACTCCAGGCACTCGCTCGTGTCCTT CGCAGTCCGCATCATTCCCAGCCCCGACTGGTTTGTGGGCGTCGACAGCCTGGACCTGTG TGACGGGGACCACTGGAGGGAGCAGGTGGCCGTGGACCTCCACCCCTACGACGCCGGGAC CGACAGCGGCTTCACCTTCTCCTCTCCCAACTTCGCGACTTCAGGACACGGTGACCGAGA TTACAGCCTCCTCTCCCAACCACCCCGCAAACTCCTTCTTCTACCCGCGGCTGAAGGCCC TGCCTCCCATCGCCAGAGTGACCCTGGTGCAGCTCCGGCAGAGCCCCAGGGCCTTCGTCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCCTCCCGTCGGTCCTGCTGGGTGATGGGAACCGTGAGTGCGGTCGCCCCCCGGGCCCG CGCCCTCTGGGCCCTCCTCCTGGCCTCTCTTGGCACCGCTGCCGGGCAGCCGCTGGGAGG AGAGTCCGTGTGCACGGCCCAGCCCCTGGCCAAGTATGGCATCACCTTCACGGGCAAGTG GAGCCAGGCGGCCTTCCCCAAGCAGTACCCGCTGTTCCGCCCGCCCGCGCAGTGGTCTGC CCTCCTGGGGGCAGCGCACAGCTCTGACTACAGCCTGTGGAGGAAGGACCAGTATGTCAG CAATGGGCTGAGGGACTTCGTGGAGCGGGGCGAGGCCTGGGCCCTGATGAGGGAGATGGA GGCGGCCGGGGAGAAGCTGCAGAGCGTGCACGGCGTGTTCTCCGCCCCCGCCGTGCCCAG CGGCACCGGGCAGACCTCCACGGAGCTGGAGGTCCACTCCAGGCACTCGCTCGTGTCCTT CGCAGTCCGCATCATTCCCAGCCCCGACTGGTTTGTGGGCGTCGACAGCCTGGACCTGTG TGACGGGGACCACTGGAGGGAGCAGGTGGCCGTGGACCTCCACCCCTACGACGCCGGGAC CGACAGCGGCTTCACCTTCTCCTCTCCCAACTTCGCGACTTCAGGACACGGTGACCGAGA TTACAGCCTCCTCTCCCAACCACCCCGCAAACTCCTTCTTCTACCCGCGGCTGAAGGCCC TGCCTCCCATCGCCAGAGTGACCCTGGTGCAGCTCCGGCAGAGCCCCAGGGCCTTCGTCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 663-780, - strand, RNAz p=0.524126 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 663-780, - strand, RNAz p=0.524126 |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 198-475, gnl|bosTau2|chr6 (64781422-64781701) | |
| 198-475, gnl|danRer3|chr14 (12095348-12095116) | |
| 198-475, gnl|dasNov1|scaffold_265855 (1340-1579) | |
| 198-475, gnl|fr1|chrUn (32967588-32967810) | |
| 198-475, gnl|galGal2|chr4 (85030655-85030426) | |
| 198-475, gnl|hg17|chr4 (1154874-1155110) | |
| 198-475, gnl|Hg17|chr4 (1155142-1154878) | |
| 198-475, gnl|mm7|chr5 (32279337-32279572) | |
| 198-475, gnl|Mm7|chr5 (32279617-32279340) | |
| 198-475, gnl|monDom2|scaffold_10 (46694908-46694673) | |
| 198-475, gnl|panTro1|chr3 (1239330-1239566) | |
| 198-475, gnl|rheMac2|chr1 (2795034-2794798) | |
| 198-475, gnl|rn3|chr14 (82976294-82976529) | |
| 198-475, gnl|tetNig1|chr1 (5736559-5736766) | |
| 198-475, gnl|xenTro1|scaffold_149 (1812446-1812682) | |
| 658-780, gnl|bosTau2|chr6 (64782099-64782221) | |
| 658-780, gnl|canFam2|chr3 (94251994-94251799) | |
| 658-780, gnl|danRer3|chr14 (12097414-12097218) | |
| 658-780, gnl|dasNov1|scaffold_265855 (246-440) | |
| 658-780, gnl|fr1|chrUn (32966606-32966800) | |
| 658-780, gnl|galGal2|chr4 (85032421-85032225) | |
| 658-780, gnl|hg17|chr4 (1154016-1154212) | |
| 658-780, gnl|Hg17|chr4 (1154196-1154074) | |
| 658-780, gnl|mm7|chr5 (32278292-32278492) | |
| 658-780, gnl|Mm7|chr5 (32278471-32278349) | |
| 658-780, gnl|monDom2|scaffold_10 (46698616-46698421) | |
| 658-780, gnl|panTro1|chr3 (1238472-1238668) | |
| 658-780, gnl|rheMac2|chr1 (2795891-2795695) | |
| 658-780, gnl|rn3|chr14 (82975273-82975475) | |
| 658-780, gnl|tetNig1|chr1 (5735374-5735581) | |
| 658-780, gnl|xenTro1|scaffold_149 (1808744-1808944) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 198-475, gnl|bosTau2|chr6 (64781422-64781701) | |
| 198-475, gnl|danRer3|chr14 (12095348-12095116) | |
| 198-475, gnl|dasNov1|scaffold_265855 (1340-1579) | |
| 198-475, gnl|fr1|chrUn (32967588-32967810) | |
| 198-475, gnl|galGal2|chr4 (85030655-85030426) | |
| 198-475, gnl|hg17|chr4 (1154874-1155110) | |
| 198-475, gnl|Hg17|chr4 (1155142-1154878) | |
| 198-475, gnl|mm7|chr5 (32279337-32279572) | |
| 198-475, gnl|Mm7|chr5 (32279617-32279340) | |
| 198-475, gnl|monDom2|scaffold_10 (46694908-46694673) | |
| 198-475, gnl|panTro1|chr3 (1239330-1239566) | |
| 198-475, gnl|rheMac2|chr1 (2795034-2794798) | |
| 198-475, gnl|rn3|chr14 (82976294-82976529) | |
| 198-475, gnl|tetNig1|chr1 (5736559-5736766) | |
| 198-475, gnl|xenTro1|scaffold_149 (1812446-1812682) | |
| 658-780, gnl|bosTau2|chr6 (64782099-64782221) | |
| 658-780, gnl|canFam2|chr3 (94251994-94251799) | |
| 658-780, gnl|danRer3|chr14 (12097414-12097218) | |
| 658-780, gnl|dasNov1|scaffold_265855 (246-440) | |
| 658-780, gnl|fr1|chrUn (32966606-32966800) | |
| 658-780, gnl|galGal2|chr4 (85032421-85032225) | |
| 658-780, gnl|hg17|chr4 (1154016-1154212) | |
| 658-780, gnl|Hg17|chr4 (1154196-1154074) | |
| 658-780, gnl|mm7|chr5 (32278292-32278492) | |
| 658-780, gnl|Mm7|chr5 (32278471-32278349) | |
| 658-780, gnl|monDom2|scaffold_10 (46698616-46698421) | |
| 658-780, gnl|panTro1|chr3 (1238472-1238668) | |
| 658-780, gnl|rheMac2|chr1 (2795891-2795695) | |
| 658-780, gnl|rn3|chr14 (82975273-82975475) | |
| 658-780, gnl|tetNig1|chr1 (5735374-5735581) | |
| 658-780, gnl|xenTro1|scaffold_149 (1808744-1808944) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| hlv (0.139256) | |
| pla (0.133672) | |
| eru (0.120048) | |
| med (0.116252) | |
| jca (0.11396) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hlv (0.139256) | |
| pla (0.133672) | |
| eru (0.120048) | |
| med (0.116252) | |
| jca (0.11396) |