Ss1.1-rjca12c_f19.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGGCGGCGAGGACGCTTTCCGCGGGCAGAGCCCATCCAGCTCCGACGGGCAGATGCTGGA AGTGCGACCGGGGTTGTTCCTGGGTGGAGCCGCGGCCATCGCAGAGCCCAACCACCTGAA AGAGGCAGGCATTACGGGCTGTGCTGACGGTGGACTCGGAGGAGCCCGACTTTAAGGCAG GGGCTGGGGTCGAGGGTCTACGGAGGTCTCTTCGTGCCAGCGCTGGACAAACCCGAGACC GACCTGCTCAGCCATCTGGACCGGTGCTTGGCTTTCATCAGCCAGGCCCGCGCTGAGGGC AGCGGTGCTAGTGTGCACTGTCATGCAGGAGTCAGTCGAAGTGTGGCTGTAATGACTGCT TTTATGATGAAGACTGACCAACTTAGCTTTGAAAAAGCCTATGAAAATCTTCAGACTATC AAACCAGAGGCTAAGATGAATGAGGGATTTGAGTGGCAACTGAAATTATACCAGGCCATG GGATGTGAAGTAGATACCTCTAGTACAATTTATAAACAATATCGTTTACAAAAGGTTACA GAGAAGTATCCAGAATTGCAGAGCTTACCTCAAGAACTCTTTGCTGTTGACCCGTCTGCC ATTTCACAGGGATTGAAAGATGGGGTTCTCTACAAATGTAGAAAGTGCAGGCGATCTTTA TTTCGAAGTTCTAGCATTTTGGATCATAATGAAGGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGGCGGCGAGGACGCTTTCCGCGGGCAGAGCCCATCCAGCTCCGACGGGCAGATGCTGGA AGTGCGACCGGGGTTGTTCCTGGGTGGAGCCGCGGCCATCGCAGAGCCCAACCACCTGAA AGAGGCAGGCATTACGGGCTGTGCTGACGGTGGACTCGGAGGAGCCCGACTTTAAGGCAG GGGCTGGGGTCGAGGGTCTACGGAGGTCTCTTCGTGCCAGCGCTGGACAAACCCGAGACC GACCTGCTCAGCCATCTGGACCGGTGCTTGGCTTTCATCAGCCAGGCCCGCGCTGAGGGC AGCGGTGCTAGTGTGCACTGTCATGCAGGAGTCAGTCGAAGTGTGGCTGTAATGACTGCT TTTATGATGAAGACTGACCAACTTAGCTTTGAAAAAGCCTATGAAAATCTTCAGACTATC AAACCAGAGGCTAAGATGAATGAGGGATTTGAGTGGCAACTGAAATTATACCAGGCCATG GGATGTGAAGTAGATACCTCTAGTACAATTTATAAACAATATCGTTTACAAAAGGTTACA GAGAAGTATCCAGAATTGCAGAGCTTACCTCAAGAACTCTTTGCTGTTGACCCGTCTGCC ATTTCACAGGGATTGAAAGATGGGGTTCTCTACAAATGTAGAAAGTGCAGGCGATCTTTA TTTCGAAGTTCTAGCATTTTGGATCATAATGAAGGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 435-553, + strand, RNAz p=0.846557 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 435-553, + strand, RNAz p=0.846557 |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 1-320, gnl|bosTau2|chr3 (18992721-18992404) | |
| 1-320, gnl|canFam2|chr38 (23920777-23920291) | |
| 1-320, gnl|dasNov1|scaffold_6830 (16276-15784) | |
| 1-320, gnl|echTel1|scaffold_308771 (14247-13760) | |
| 1-320, gnl|hg17|chr1 (158451169-158451658) | |
| 1-320, gnl|Hg17|chr1 (158451276-158451593) | |
| 1-320, gnl|loxAfr1|scaffold_20564 (29510-29017) | |
| 1-320, gnl|mm7|chr1 (170861961-170861492) | |
| 1-320, gnl|Mm7|chr1 (170861857-170861543) | |
| 1-320, gnl|monDom2|scaffold_16 (11306482-11306932) | |
| 1-320, gnl|oryCun1|scaffold_205982 (48733-48247) | |
| 1-320, gnl|panTro1|chr1_random (28088459-28087970) | |
| 1-320, gnl|rheMac2|chr1 (140272089-140272559) | |
| 1-320, gnl|rn3|chr13 (86760434-86759965) | |
| 435-553, gnl|bosTau2|chr3 (18989598-18989479) | |
| 435-553, gnl|canFam2|chr38 (23917651-23917529) | |
| 435-553, gnl|danRer3|chrNA (47238564-47238442) | |
| 435-553, gnl|dasNov1|scaffold_6830 (11977-11855) | |
| 435-553, gnl|echTel1|scaffold_308771 (9684-9562) | |
| 435-553, gnl|fr1|chrUn (284928044-284927922) | |
| 435-553, gnl|hg17|chr1 (158453309-158453431) | |
| 435-553, gnl|Hg17|chr1 (158453314-158453432) | |
| 435-553, gnl|mm7|chr1 (170857174-170857052) | |
| 435-553, gnl|Mm7|chr1 (170857167-170857049) | |
| 435-553, gnl|monDom2|scaffold_16 (11309754-11309876) | |
| 435-553, gnl|oryCun1|scaffold_205982 (46205-46083) | |
| 435-553, gnl|panTro1|chr1_random (28086313-28086191) | |
| 435-553, gnl|rheMac2|chr1 (140274244-140274366) | |
| 435-553, gnl|rn3|chr13 (86757311-86757189) | |
| 435-553, gnl|xenTro1|scaffold_582 (356387-356509) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-320, gnl|bosTau2|chr3 (18992721-18992404) | |
| 1-320, gnl|canFam2|chr38 (23920777-23920291) | |
| 1-320, gnl|dasNov1|scaffold_6830 (16276-15784) | |
| 1-320, gnl|echTel1|scaffold_308771 (14247-13760) | |
| 1-320, gnl|hg17|chr1 (158451169-158451658) | |
| 1-320, gnl|Hg17|chr1 (158451276-158451593) | |
| 1-320, gnl|loxAfr1|scaffold_20564 (29510-29017) | |
| 1-320, gnl|mm7|chr1 (170861961-170861492) | |
| 1-320, gnl|Mm7|chr1 (170861857-170861543) | |
| 1-320, gnl|monDom2|scaffold_16 (11306482-11306932) | |
| 1-320, gnl|oryCun1|scaffold_205982 (48733-48247) | |
| 1-320, gnl|panTro1|chr1_random (28088459-28087970) | |
| 1-320, gnl|rheMac2|chr1 (140272089-140272559) | |
| 1-320, gnl|rn3|chr13 (86760434-86759965) | |
| 435-553, gnl|bosTau2|chr3 (18989598-18989479) | |
| 435-553, gnl|canFam2|chr38 (23917651-23917529) | |
| 435-553, gnl|danRer3|chrNA (47238564-47238442) | |
| 435-553, gnl|dasNov1|scaffold_6830 (11977-11855) | |
| 435-553, gnl|echTel1|scaffold_308771 (9684-9562) | |
| 435-553, gnl|fr1|chrUn (284928044-284927922) | |
| 435-553, gnl|hg17|chr1 (158453309-158453431) | |
| 435-553, gnl|Hg17|chr1 (158453314-158453432) | |
| 435-553, gnl|mm7|chr1 (170857174-170857052) | |
| 435-553, gnl|Mm7|chr1 (170857167-170857049) | |
| 435-553, gnl|monDom2|scaffold_16 (11309754-11309876) | |
| 435-553, gnl|oryCun1|scaffold_205982 (46205-46083) | |
| 435-553, gnl|panTro1|chr1_random (28086313-28086191) | |
| 435-553, gnl|rheMac2|chr1 (140274244-140274366) | |
| 435-553, gnl|rn3|chr13 (86757311-86757189) | |
| 435-553, gnl|xenTro1|scaffold_582 (356387-356509) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.20816) | |
| tbr (0.154178) | |
| jca (0.11396) |