Non-Coding RNA Search

Ss1.1-rjca13c_c6.5

Sequence:


               
               GTGAACATAAGCGTTTATTGAGGACCAGCCTGGGAAAGCAGGAGATGAGGGAACAGGGCC
TGAATCGGCCCAAGGTGGAGTCTGATCTCCTCTGGCCAGACCCATCTCTGATCAGCTGTG
TGGTCCACCCCAGGGAGCTGGAAGAGTGTCAGCGGAACCACGAGGGTGAAGAGGATGACG
GCCACATCCGGGCCCAGCAGGCCTGCATCGAGGCCAAGCATGTGAGGGTGCCCTGCCCAC
GTGTGGGTCCTGTGTGTATTTGCACGTGTGTGATGTGAGGTGACCCTGGCTCCTGTTGGG
TCTTTGTGGGCGGGGTGCCTGGGGAAAGGCGACAGGGGCTCAAGCTTCTCTGGAGCTGCC
TGGTTTTTTGTAGGATAAGTACTTGGCAGACATGGATGAGCTCTTCTCCCAGGTGGATGA
GAAGAGAAAGGTAAGCTGCCTGTTCCCTGGGCCCTGTGGGTAGCAGGAGCCAGGGCAGTG
CCCCTTCCCGCTCCTGACCTGAGCTTGGGTGCTGCAGAAGCGAGACATCCCTGACTACCT
GTGTGGCAAGATCAGCTTCGAGCTGATGCGGGAGCCGTGCATCACGCCCAGTGGCATCAC
CTATGACCGCAAGGACATTGAGGAGCACCTGCAGGTAAGGGTCCGTAGCCGCTGGGGGCA
GGGCCCACACCCACTGGGCATCTTCTCATTCTGATCCTGTTGCCACTGCAGCGCGTGGGC
CACTTTGACCCTGTGACTCGGAGCCCCCTGACCCAGGAACAGCTCATCCCCAACCTGGCC
ATGAAGGAGGTCATTGATGCGTTCATCTCGGAGAATGGCTGGGTGGAGGACTACTGAGGC
AGGGCAAGTGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGAACATAAGCGTTTATTGAGGACCAGCCTGGGAAAGCAGGAGATGAGGGAACAGGGCC
TGAATCGGCCCAAGGTGGAGTCTGATCTCCTCTGGCCAGACCCATCTCTGATCAGCTGTG
TGGTCCACCCCAGGGAGCTGGAAGAGTGTCAGCGGAACCACGAGGGTGAAGAGGATGACG
GCCACATCCGGGCCCAGCAGGCCTGCATCGAGGCCAAGCATGTGAGGGTGCCCTGCCCAC
GTGTGGGTCCTGTGTGTATTTGCACGTGTGTGATGTGAGGTGACCCTGGCTCCTGTTGGG
TCTTTGTGGGCGGGGTGCCTGGGGAAAGGCGACAGGGGCTCAAGCTTCTCTGGAGCTGCC
TGGTTTTTTGTAGGATAAGTACTTGGCAGACATGGATGAGCTCTTCTCCCAGGTGGATGA
GAAGAGAAAGGTAAGCTGCCTGTTCCCTGGGCCCTGTGGGTAGCAGGAGCCAGGGCAGTG
CCCCTTCCCGCTCCTGACCTGAGCTTGGGTGCTGCAGAAGCGAGACATCCCTGACTACCT
GTGTGGCAAGATCAGCTTCGAGCTGATGCGGGAGCCGTGCATCACGCCCAGTGGCATCAC
CTATGACCGCAAGGACATTGAGGAGCACCTGCAGGTAAGGGTCCGTAGCCGCTGGGGGCA
GGGCCCACACCCACTGGGCATCTTCTCATTCTGATCCTGTTGCCACTGCAGCGCGTGGGC
CACTTTGACCCTGTGACTCGGAGCCCCCTGACCCAGGAACAGCTCATCCCCAACCTGGCC
ATGAAGGAGGTCATTGATGCGTTCATCTCGGAGAATGGCTGGGTGGAGGACTACTGAGGC
AGGGCAAGTGGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|10441867|gb|AAG17211.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|10441867|gb|AAG17211.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               229-334, - strand, RNAz p=0.715273

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               229-334, - strand, RNAz p=0.715273

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AF370420, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AF370420, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-844, gnl|bosTau2|chr25 (1216172-1215324)
               

               
               1-844, gnl|Hg17|chr16 (671659-672491)
               

               
               1-844, gnl|Mm7|chr17 (24015005-24014124)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-844, gnl|bosTau2|chr25 (1216172-1215324)
               

               
               1-844, gnl|Hg17|chr16 (671659-672491)
               

               
               1-844, gnl|Mm7|chr17 (24015005-24014124)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               cut (0.169924)
               

               
               hyp (0.142837)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.169924)
               

               
               hyp (0.142837)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

	1-844, gnl\|bosTau2\|chr25 (1216172-1215324)
	1-844, gnl\|Hg17\|chr16 (671659-672491)
	1-844, gnl\|Mm7\|chr17 (24015005-24014124)

	cut (0.169924)
	hyp (0.142837)
	med (0.116252)
	jca (0.11396)
	ldo (0.0970026)