Non-Coding RNA Search

Ss1.1-rjca13c_i3.5

Sequence:


               
               CCTGGAAGTTCCAGTATGACCTGGCACACATTCCACGTGGGTCGGTGGTGGCACGCAGCT
GAGCACCCCGGGGGTGGGCCGGGCTGGGATCCCAGAGGCCGAGGGCGGCTCCCCTCAAGA
GCGTCCCTCCTTGAACGAGGCTGGGGCGCAGGACAGGCCGGAGGCTGTGCGCCCTTCCCG
CTCAGCCTTGGCCAAAACCTTCGTGCGGGTCGGGCAGGGCTGGGAGACTGGGGCCCGCGC
TCAGGGGATGCGGGCTTCCCCGGGCGTGGGCAGGACCAGCCCTCGCTGCTTGTGTTCGTT
CCCCCTTCCAGTCCGCCCCATCCCCGGAGTCCATCCCGGGAACGCAAAAGGAAGAGCCGT
GACAGACCGCACTCGACGAGACCGCCCGTCTCCGGGGGCCGCAGTGCCACGAGCACGGGA
GAGCGGAGACAGCGCTCGATCCATGTGCACACCCGTGCGCCCCTCTATATATATGTCACA
TAGAATGTATATATGTTGGGAACATGCTCGCTTCTCCCTTGTGTCGCCGCCGTGCGTCGT
GCGCTCCTCAGCACGGGGCCCTTGCGGGAAGGGGGCTCCGACGATGCCCCCTCCCCCACG
CAGCCACCACCGCCCGGGCCTGCGCCCGCCAGTTCGTCTGCCTGTCCGTCCGTGTCCTCG
GCAATGTCCACGCTTCGATAGGCCTGACGCAGCCCCAACCCGGGGCCGCCCTAGCAACTT
CTTGTACATATGACTGTAAAATGGTGAACGTGTGTATTATATCTGGCCTCGTTATATAGT
GTATATATATGTATACATATACATATATATAATATATATGAAGACTGTAAATGGTAAGAC
GATTAGTGTTCTTATTAGTATATTGCTTCACACTGAAGATTGTGTGTATCGAGCTGTTTC
TAAAAGATGTTTATTTTCCTTAAGAGTAAAAAAAAAAACAAACCAGTCATTGCATTCAGA
AAAAAAAAAAAAGTCAATAAAGATACAACGATGGTTTGGGAATTCTGCGGCCTGTGGATT
CCGACCAGATTCTGTTGGGAGAGGGGCCAGGTGTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGGAAGTTCCAGTATGACCTGGCACACATTCCACGTGGGTCGGTGGTGGCACGCAGCT
GAGCACCCCGGGGGTGGGCCGGGCTGGGATCCCAGAGGCCGAGGGCGGCTCCCCTCAAGA
GCGTCCCTCCTTGAACGAGGCTGGGGCGCAGGACAGGCCGGAGGCTGTGCGCCCTTCCCG
CTCAGCCTTGGCCAAAACCTTCGTGCGGGTCGGGCAGGGCTGGGAGACTGGGGCCCGCGC
TCAGGGGATGCGGGCTTCCCCGGGCGTGGGCAGGACCAGCCCTCGCTGCTTGTGTTCGTT
CCCCCTTCCAGTCCGCCCCATCCCCGGAGTCCATCCCGGGAACGCAAAAGGAAGAGCCGT
GACAGACCGCACTCGACGAGACCGCCCGTCTCCGGGGGCCGCAGTGCCACGAGCACGGGA
GAGCGGAGACAGCGCTCGATCCATGTGCACACCCGTGCGCCCCTCTATATATATGTCACA
TAGAATGTATATATGTTGGGAACATGCTCGCTTCTCCCTTGTGTCGCCGCCGTGCGTCGT
GCGCTCCTCAGCACGGGGCCCTTGCGGGAAGGGGGCTCCGACGATGCCCCCTCCCCCACG
CAGCCACCACCGCCCGGGCCTGCGCCCGCCAGTTCGTCTGCCTGTCCGTCCGTGTCCTCG
GCAATGTCCACGCTTCGATAGGCCTGACGCAGCCCCAACCCGGGGCCGCCCTAGCAACTT
CTTGTACATATGACTGTAAAATGGTGAACGTGTGTATTATATCTGGCCTCGTTATATAGT
GTATATATATGTATACATATACATATATATAATATATATGAAGACTGTAAATGGTAAGAC
GATTAGTGTTCTTATTAGTATATTGCTTCACACTGAAGATTGTGTGTATCGAGCTGTTTC
TAAAAGATGTTTATTTTCCTTAAGAGTAAAAAAAAAAACAAACCAGTCATTGCATTCAGA
AAAAAAAAAAAAGTCAATAAAGATACAACGATGGTTTGGGAATTCTGCGGCCTGTGGATT
CCGACCAGATTCTGTTGGGAGAGGGGCCAGGTGTTG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               404-519, - strand, RNAz p=0.849769
               

               
               706-865, - strand, RNAz p=0.996536

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               404-519, - strand, RNAz p=0.849769
               

               
               706-865, - strand, RNAz p=0.996536

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               838-916, - strand, RNAmicro p=0.992049
               

               
               831-924, + strand, RNAmicro p=0.963755

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               838-916, - strand, RNAmicro p=0.992049
               

               
               831-924, + strand, RNAmicro p=0.963755

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               706-865, BP394589 Homo sapiens pancreatic islet Homo sapiens cDNA clone 
(dbj|BP394589.1|), blast E-value=0.00000000004, identity=95.65% 
               

               
               706-865, BX090096 NCI_CGAP_Ut1 Homo sapiens cDNA clone IMAGp998F195520 ; 
(emb|BX090096.1|), blast E-value=0.00000000004, identity=95.65% 
               

               
               706-865, UI-H-FE1-bea-b-22-0-UI.s1 NCI_CGAP_FE1 Homo sapiens cDNA clone 
(gb|CA424292.1|), blast E-value=0.00000000004, identity=95.65% 
               

               
               706-865, UI-H-EI1-ayy-g-09-0-UI.s1 NCI_CGAP_EI1 Homo sapiens cDNA clone 
(gb|CA449686.1|), blast E-value=0.00000000004, identity=95.65% 
               

               
               706-865, UI-CF-FN0-aga-j-05-0-UI.s1 UI-CF-FN0 Homo sapiens cDNA clone 
(gb|CB853285.1|), blast E-value=0.00000000004, identity=95.65% 
               

               
               706-865, 17000531892320 GRN_EB Homo sapiens cDNA 5', mRNA sequence 
(gb|CN268087.1|), blast E-value=0.00000000004, identity=95.65%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               706-865, BP394589 Homo sapiens pancreatic islet Homo sapiens cDNA clone 
(dbj|BP394589.1|), blast E-value=0.00000000004, identity=95.65% 
               

               
               706-865, BX090096 NCI_CGAP_Ut1 Homo sapiens cDNA clone IMAGp998F195520 ; 
(emb|BX090096.1|), blast E-value=0.00000000004, identity=95.65% 
               

               
               706-865, UI-H-FE1-bea-b-22-0-UI.s1 NCI_CGAP_FE1 Homo sapiens cDNA clone 
(gb|CA424292.1|), blast E-value=0.00000000004, identity=95.65% 
               

               
               706-865, UI-H-EI1-ayy-g-09-0-UI.s1 NCI_CGAP_EI1 Homo sapiens cDNA clone 
(gb|CA449686.1|), blast E-value=0.00000000004, identity=95.65% 
               

               
               706-865, UI-CF-FN0-aga-j-05-0-UI.s1 UI-CF-FN0 Homo sapiens cDNA clone 
(gb|CB853285.1|), blast E-value=0.00000000004, identity=95.65% 
               

               
               706-865, 17000531892320 GRN_EB Homo sapiens cDNA 5', mRNA sequence 
(gb|CN268087.1|), blast E-value=0.00000000004, identity=95.65%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               148-1051, gnl|bosTau2|chr19 (24377095-24377998)
               

               
               148-1051, gnl|Hg17|chr17 (17654577-17655540)
               

               
               148-1051, gnl|Mm7|chr11 (60279899-60280800)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               148-1051, gnl|bosTau2|chr19 (24377095-24377998)
               

               
               148-1051, gnl|Hg17|chr17 (17654577-17655540)
               

               
               148-1051, gnl|Mm7|chr11 (60279899-60280800)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               jca (0.34188)
               

               
               nms (0.213858)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.34188)
               

               
               nms (0.213858)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

	404-519, - strand, RNAz p=0.849769
	706-865, - strand, RNAz p=0.996536

	838-916, - strand, RNAmicro p=0.992049
	831-924, + strand, RNAmicro p=0.963755

	706-865, BP394589 Homo sapiens pancreatic islet Homo sapiens cDNA clone (dbj\|BP394589.1\|), blast E-value=0.00000000004, identity=95.65%
	706-865, BX090096 NCI_CGAP_Ut1 Homo sapiens cDNA clone IMAGp998F195520 ; (emb\|BX090096.1\|), blast E-value=0.00000000004, identity=95.65%
	706-865, UI-H-FE1-bea-b-22-0-UI.s1 NCI_CGAP_FE1 Homo sapiens cDNA clone (gb\|CA424292.1\|), blast E-value=0.00000000004, identity=95.65%
	706-865, UI-H-EI1-ayy-g-09-0-UI.s1 NCI_CGAP_EI1 Homo sapiens cDNA clone (gb\|CA449686.1\|), blast E-value=0.00000000004, identity=95.65%
	706-865, UI-CF-FN0-aga-j-05-0-UI.s1 UI-CF-FN0 Homo sapiens cDNA clone (gb\|CB853285.1\|), blast E-value=0.00000000004, identity=95.65%
	706-865, 17000531892320 GRN_EB Homo sapiens cDNA 5', mRNA sequence (gb\|CN268087.1\|), blast E-value=0.00000000004, identity=95.65%

	148-1051, gnl\|bosTau2\|chr19 (24377095-24377998)
	148-1051, gnl\|Hg17\|chr17 (17654577-17655540)
	148-1051, gnl\|Mm7\|chr11 (60279899-60280800)

	jca (0.34188)
	nms (0.213858)
	fhi (0.169578)
	nco (0.161734)
	pty (0.142714)
	lnt (0.142308)
	ecc (0.115035)
	eje (0.0988338)